JAL-2349 JAL-3855 PAE tests covers ContactListI.getMappedPositons

[jalview.git] / src / jalview / datamodel / ContactListProviderI.java

diff --git a/src/jalview/datamodel/ContactListProviderI.java b/src/jalview/datamodel/ContactListProviderI.java
index a4e0b79..75de1a4 100644 (file)
--- a/src/jalview/datamodel/ContactListProviderI.java
+++ b/src/jalview/datamodel/ContactListProviderI.java
@@ -30,7 +30,7 @@ public interface ContactListProviderI
 
 
   /**
-   * Return positions in local reference corresponding to cStart and cEnd in matrix data
+   * Return positions in local reference corresponding to cStart and cEnd in matrix data. Positions are base 1 column indices for sequence associated matrices.
    * @param cStart
    * @param cEnd
    * @return int[] { start, end (inclusive) for each contiguous segment}