AlignmentAnnotation aa = new AlignmentAnnotation(cm.getAnnotLabel(),
cm.getAnnotDescr(), new Annotation[0]);
- aa.graph = AlignmentAnnotation.CUSTOMRENDERER;
+ aa.graph = AlignmentAnnotation.CONTACT_MAP;
aa.graphMin = cm.getMin();
aa.graphMax = cm.getMax();
aa.editable = false;
+ aa.calcId=cm.getType();
contactmaps.put(aa.annotationId, cm);
// TODO: contact matrices could be intra or inter - more than one refseq