Merge branch 'develop' into features/JAL-4134_use_annotation_row_for_colours_and_groups

[jalview.git] / src / jalview / datamodel / ContactMatrix.java

diff --git a/src/jalview/datamodel/ContactMatrix.java b/src/jalview/datamodel/ContactMatrix.java
index bbc5100..48b6e6b 100644 (file)
--- a/src/jalview/datamodel/ContactMatrix.java
+++ b/src/jalview/datamodel/ContactMatrix.java
@@ -160,21 +160,17 @@ public abstract class ContactMatrix implements ContactMatrixI
   {
     return "Contact Matrix";
   }
-
   GroupSet grps = new GroupSet();
-
   @Override
   public GroupSetI getGroupSet()
   {
     return grps;
   }
-
   @Override
   public void setGroupSet(GroupSet makeGroups)
   {
     grps = makeGroups;
   }
-
   public static String contactToFloatString(ContactMatrixI cm)
   {
     StringBuilder sb = new StringBuilder();
@@ -202,7 +198,6 @@ public abstract class ContactMatrix implements ContactMatrixI
     float[][] vals = new float[cols][rows];
     StringTokenizer tabsep = new StringTokenizer(values, "" + '\t');
     int c = 0, r = 0;
-
     while (tabsep.hasMoreTokens())
     {
       double elem = Double.valueOf(tabsep.nextToken());
@@ -214,7 +209,6 @@ public abstract class ContactMatrix implements ContactMatrixI
       }
       if (c >= vals.length)
       {
-
         break;
       }
     }
@@ -223,7 +217,6 @@ public abstract class ContactMatrix implements ContactMatrixI
       Console.warn(
               "Ignoring additional elements for Float string to contact matrix parsing.");
     }
-
     return vals;
   }
 }