JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings

[jalview.git] / src / jalview / datamodel / DBRefEntry.java

diff --git a/src/jalview/datamodel/DBRefEntry.java b/src/jalview/datamodel/DBRefEntry.java
index 98868ce..bc8d0cf 100755 (executable)
--- a/src/jalview/datamodel/DBRefEntry.java
+++ b/src/jalview/datamodel/DBRefEntry.java
@@ -27,15 +27,6 @@ import java.util.List;
 
 public class DBRefEntry implements DBRefEntryI
 {
-  /*
-   * the mapping to chromosome (genome) is held as an instance with
-   * source = speciesId
-   * version = assemblyId
-   * accessionId = "chromosome:" + chromosomeId
-   * map = mapping from sequence to reference assembly
-   */
-  public static final String CHROMOSOME = "chromosome";
-
   String source = "";
 
   String version = "";
@@ -344,14 +335,4 @@ public class DBRefEntry implements DBRefEntryI
     }
     return true;
   }
-
-  /**
-   * Mappings to chromosome are held with accessionId as "chromosome:id"
-   * 
-   * @return
-   */
-  public boolean isChromosome()
-  {
-    return accessionId != null && accessionId.startsWith(CHROMOSOME + ":");
-  }
 }