public class MappedFeatures
{
/*
- * the mapping from CDS to peptide
+ * the mapping from one sequence to another
*/
public final Mapping mapping;
/**
- * the CDS sequence mapped to
+ * the sequence mapped to
*/
public final SequenceI fromSeq;
/*
- * the residue position in the peptide sequence
+ * the residue position in the sequence mapped from
*/
public final int fromPosition;
/*
- * the peptide residue at the position
+ * the residue at fromPosition
*/
public final char fromResidue;
/*
- * features on CDS that overlap the codon positions
+ * features on the sequence mapped to that overlap the mapped positions
*/
public final List<SequenceFeature> features;