JAL-3303 ignore deletions when computing peptide variants

[jalview.git] / src / jalview / datamodel / MappedFeatures.java

diff --git a/src/jalview/datamodel/MappedFeatures.java b/src/jalview/datamodel/MappedFeatures.java
index 25f5ba4..4c63916 100644 (file)
--- a/src/jalview/datamodel/MappedFeatures.java
+++ b/src/jalview/datamodel/MappedFeatures.java
@@ -144,7 +144,7 @@ public class MappedFeatures
       for (String allele : alleles)
       {
         allele = allele.trim().toUpperCase();
-        if (allele.length() > 1)
+        if (allele.length() > 1 || "-".equals(allele))
         {
           continue; // multi-locus variant
         }