jalview 2.5 release banner

[jalview.git] / src / jalview / datamodel / Mapping.java

diff --git a/src/jalview/datamodel/Mapping.java b/src/jalview/datamodel/Mapping.java
index d45abca..db1cfd0 100644 (file)
--- a/src/jalview/datamodel/Mapping.java
+++ b/src/jalview/datamodel/Mapping.java
@@ -1,20 +1,19 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.datamodel;
 
@@ -52,16 +51,16 @@ public class Mapping
    * create a new mapping from
    * 
    * @param to
-   *                the sequence being mapped
+   *          the sequence being mapped
    * @param exon
-   *                int[] {start,end,start,end} series on associated sequence
+   *          int[] {start,end,start,end} series on associated sequence
    * @param is
-   *                int[] {start,end,...} ranges on the reference frame being
-   *                mapped to
+   *          int[] {start,end,...} ranges on the reference frame being mapped
+   *          to
    * @param i
-   *                step size on associated sequence
+   *          step size on associated sequence
    * @param j
-   *                step size on mapped frame
+   *          step size on mapped frame
    */
   public Mapping(SequenceI to, int[] exon, int[] is, int i, int j)
   {
@@ -96,7 +95,7 @@ public class Mapping
 
   /**
    * @param map
-   *                the map to set
+   *          the map to set
    */
   public void setMap(MapList map)
   {
@@ -149,7 +148,7 @@ public class Mapping
    * gets boundary in direction of mapping
    * 
    * @param position
-   *                in mapped reference frame
+   *          in mapped reference frame
    * @return int{start, end} positions in associated sequence (in direction of
    *         mapped word)
    */