Merge branch 'patch/JAL-3840_2_11_1_4' into releases/Release_2_11_1_Branch

[jalview.git] / src / jalview / datamodel / ResidueCount.java

diff --git a/src/jalview/datamodel/ResidueCount.java b/src/jalview/datamodel/ResidueCount.java
index 74eb887..efab97c 100644 (file)
--- a/src/jalview/datamodel/ResidueCount.java
+++ b/src/jalview/datamodel/ResidueCount.java
@@ -70,7 +70,7 @@ public class ResidueCount
    */
   private static final String AAS = "ACDEFGHIKLMNPQRSTUVWXY";
 
-  private static final int GAP_COUNT = 0;
+  static final int GAP_COUNT = 0;
 
   /*
    * fast lookup tables holding the index into our count
@@ -212,7 +212,12 @@ public class ResidueCount
         counts[offset] = (short) ++newValue;
       }
     }
-    maxCount = Math.max(maxCount, newValue);
+
+    if (offset!=GAP_COUNT)
+    {
+      // update modal residue count
+      maxCount = Math.max(maxCount, newValue);
+    }
     return newValue;
   }
 
@@ -301,15 +306,7 @@ public class ResidueCount
    */
   public int addGap()
   {
-    int newValue;
-    if (useIntCounts)
-    {
-      newValue = ++intCounts[GAP_COUNT];
-    }
-    else
-    {
-      newValue = ++counts[GAP_COUNT];
-    }
+    int newValue = increment(GAP_COUNT);
     return newValue;
   }