JAL-1953 more javadoc comments

[jalview.git] / src / jalview / ext / archaeopteryx / JalviewBinding.java

diff --git a/src/jalview/ext/archaeopteryx/JalviewBinding.java b/src/jalview/ext/archaeopteryx/JalviewBinding.java
index f0c2866..b38ac1c 100644 (file)
--- a/src/jalview/ext/archaeopteryx/JalviewBinding.java
+++ b/src/jalview/ext/archaeopteryx/JalviewBinding.java
@@ -298,7 +298,7 @@ public final class JalviewBinding
                 .get(selectedSequence);
         if (matchingNode != null)
         {
-          treeView.getMatchingNodes().add(matchingNode.getId());
+          treeView.addToMatchingNodes(matchingNode);
 
 
           // if (!matchingNode.getBranchData().isHasBranchColor())
@@ -323,6 +323,7 @@ public final class JalviewBinding
   /**
    * Partially refactored from TreeCanvas
    */
+  @Override
   public void partitionTree(final int x)
   {
     TreeI tree = treeView.getTree();
@@ -554,7 +555,7 @@ public final class JalviewBinding
     if (matchingSequence != null)
     {
       long nodeId = nodeToMatch.getId();
-      addOrRemoveInSet(treeView.getMatchingNodes(), nodeId);
+      addOrRemoveInSet(treeView.getMatchingNodesIds(), nodeId);
       treeSelectionChanged(matchingSequence);
       parentAvport.sendSelection();
 
@@ -575,7 +576,7 @@ public final class JalviewBinding
       if (matchingSequence != null)
       {
         long nodeId = childNode.getId();
-        addOrRemoveInSet(treeView.getMatchingNodes(), nodeId);
+        addOrRemoveInSet(treeView.getMatchingNodesIds(), nodeId);
 
         treeSelectionChanged(matchingSequence);