Merge branch 'develop' into feature/JAL-3551Pymol

[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 9c7ce63..0e3d84b 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -33,6 +33,7 @@ import jalview.io.gff.SequenceOntologyI;
 import jalview.schemes.FeatureColour;
 import jalview.schemes.FeatureSettingsAdapter;
 import jalview.util.MapList;
+import jalview.util.Platform;
 
 import java.awt.Color;
 import java.io.UnsupportedEncodingException;
@@ -139,7 +140,6 @@ public class EnsemblGene extends EnsemblSeqProxy
      * convert to a non-duplicated list of gene identifiers
      */
     List<String> geneIds = getGeneIds(query);
-
     AlignmentI al = null;
     for (String geneId : geneIds)
     {
@@ -156,9 +156,7 @@ public class EnsemblGene extends EnsemblSeqProxy
       {
         // ensure id has 'correct' case for the Ensembl identifier
         geneId = geneAlignment.getSequenceAt(0).getName();
-
         findGeneLoci(geneAlignment.getSequenceAt(0), geneId);
-
         getTranscripts(geneAlignment, geneId);
       }
       if (al == null)
@@ -540,10 +538,11 @@ public class EnsemblGene extends EnsemblSeqProxy
   @Override
   public String getTestQuery()
   {
-    return "ENSG00000157764"; // BRAF, 5 transcripts, reverse strand
+    return Platform.isJS() ? "ENSG00000123569" : "ENSG00000157764";
+    // ENSG00000123569 // H2BFWT histone, 2 transcripts, reverse strand
+    // ENSG00000157764 // BRAF, 5 transcripts, reverse strand
     // ENSG00000090266 // NDUFB2, 15 transcripts, forward strand
     // ENSG00000101812 // H2BFM histone, 3 transcripts, forward strand
-    // ENSG00000123569 // H2BFWT histone, 2 transcripts, reverse strand
   }
 
   /**