JAL-2016 FeatureSettingsI now FeatureSettingsModelI

[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 0cecc59..fa1e474 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -1,7 +1,7 @@
 package jalview.ext.ensembl;
 
 import jalview.api.FeatureColourI;
-import jalview.api.FeatureSettingsI;
+import jalview.api.FeatureSettingsModelI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
@@ -489,8 +489,18 @@ public class EnsemblGene extends EnsemblSeqProxy
     return ACCESSION_REGEX;
   }
 
+  /**
+   * Returns a descriptor for suitable feature display settings with
+   * <ul>
+   * <li>only exon or sequence_variant features (or their subtypes in the
+   * Sequence Ontology) visible</li>
+   * <li>variant features coloured red</li>
+   * <li>exon features coloured by label (exon name)</li>
+   * <li>variants displayed above (on top of) exons</li>
+   * </ul>
+   */
   @Override
-  public FeatureSettingsI getFeatureColourScheme()
+  public FeatureSettingsModelI getFeatureColourScheme()
   {
     return new FeatureSettingsAdapter()
     {