JAL-1705 derive transcript sequences from gene sequence/GFF; handle CDS

[jalview.git] / src / jalview / ext / ensembl / EnsemblProtein.java

diff --git a/src/jalview/ext/ensembl/EnsemblProtein.java b/src/jalview/ext/ensembl/EnsemblProtein.java
index 5238f98..8a57a16 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblProtein.java
+++ b/src/jalview/ext/ensembl/EnsemblProtein.java
@@ -2,6 +2,7 @@ package jalview.ext.ensembl;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceI;
 
 public class EnsemblProtein extends EnsemblSeqProxy
 {
@@ -46,7 +47,8 @@ public class EnsemblProtein extends EnsemblSeqProxy
    * applicable to the protein product sequence
    */
   @Override
-  protected void addFeaturesAndProduct(String accId, AlignmentI alignment)
+  protected void addFeaturesAndProduct(String accId, AlignmentI alignment,
+          SequenceI genomicSequence)
   {
   }