JAL-2418 source formatting

[jalview.git] / src / jalview / ext / htsjdk / HtsContigDb.java

diff --git a/src/jalview/ext/htsjdk/HtsContigDb.java b/src/jalview/ext/htsjdk/HtsContigDb.java
index 4357abd..37ce625 100644 (file)
--- a/src/jalview/ext/htsjdk/HtsContigDb.java
+++ b/src/jalview/ext/htsjdk/HtsContigDb.java
@@ -70,8 +70,8 @@ public class HtsContigDb
       return;
     }
 
-    refFile = ReferenceSequenceFileFactory.getReferenceSequenceFile(
-            dbLocation, true);
+    refFile = ReferenceSequenceFileFactory
+            .getReferenceSequenceFile(dbLocation, true);
     if (refFile == null || refFile.getSequenceDictionary() == null)
     {
       // refFile = initSequenceDictionaryFor(dbLocation);
@@ -144,7 +144,8 @@ public class HtsContigDb
     ReferenceSequence refSeq;
     List<SAMSequenceRecord> ret = new ArrayList<SAMSequenceRecord>();
     Set<String> sequenceNames = new HashSet<String>();
-    for (int numSequences = 0; (refSeq = refSeqFile.nextSequence()) != null; ++numSequences)
+    for (int numSequences = 0; (refSeq = refSeqFile
+            .nextSequence()) != null; ++numSequences)
     {
       if (sequenceNames.contains(refSeq.getName()))
       {