Merge branch 'develop' into features/JAL-1705_ensembl

[jalview.git] / src / jalview / ext / varna / RnaModel.java

diff --git a/src/jalview/ext/varna/RnaModel.java b/src/jalview/ext/varna/RnaModel.java
new file mode 100644 (file)
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+++ b/src/jalview/ext/varna/RnaModel.java
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+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.ext.varna;
+
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.SequenceI;
+
+import fr.orsay.lri.varna.models.rna.RNA;
+
+/**
+ * Data bean wrapping the data items that define one RNA view
+ */
+public class RnaModel
+{
+  public final String title;
+
+  public final AlignmentAnnotation ann;
+
+  public final SequenceI seq;
+
+  public final boolean gapped;
+
+  public final RNA rna;
+
+  public RnaModel(String t, AlignmentAnnotation aa, SequenceI s, RNA r,
+          boolean g)
+  {
+    title = t;
+    ann = aa;
+    seq = s;
+    rna = r;
+    gapped = g;
+  }
+}