Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / fts / service / pdb / PDBFTSRestClient.java

diff --git a/src/jalview/fts/service/pdb/PDBFTSRestClient.java b/src/jalview/fts/service/pdb/PDBFTSRestClient.java
index 796bc0e..5619075 100644 (file)
--- a/src/jalview/fts/service/pdb/PDBFTSRestClient.java
+++ b/src/jalview/fts/service/pdb/PDBFTSRestClient.java
@@ -175,7 +175,7 @@ public class PDBFTSRestClient extends FTSRestClient
 
       URI uri = webResource.getURI();
 
-      System.out.println(uri);
+      jalview.bin.Console.outPrintln(uri);
       ClientResponse clientResponse = null;
       int responseStatus = -1;
       // Get the JSON string from the response object or directly from the
@@ -183,7 +183,7 @@ public class PDBFTSRestClient extends FTSRestClient
       Map<String, Object> jsonObj = null;
       String responseString = null;
 
-      System.out.println("query >>>>>>> " + pdbRestRequest.toString());
+      jalview.bin.Console.outPrintln("query >>>>>>> " + pdbRestRequest.toString());
 
       if (!isMocked())
       {
@@ -413,10 +413,10 @@ public class PDBFTSRestClient extends FTSRestClient
 
     for (FTSDataColumnI field : diplayFields)
     {
-      // System.out.println("Field " + field);
+      // jalview.bin.Console.outPrintln("Field " + field);
       String fieldData = (pdbJsonDoc.get(field.getCode()) == null) ? ""
               : pdbJsonDoc.get(field.getCode()).toString();
-      // System.out.println("Field Data : " + fieldData);
+      // jalview.bin.Console.outPrintln("Field Data : " + fieldData);
       if (field.isPrimaryKeyColumn())
       {
         primaryKey = fieldData;
@@ -440,7 +440,7 @@ public class PDBFTSRestClient extends FTSRestClient
         } catch (Exception e)
         {
           e.printStackTrace();
-          System.out.println("offending value:" + fieldData);
+          jalview.bin.Console.outPrintln("offending value:" + fieldData);
         }
       }
     }