Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop

[jalview.git] / src / jalview / fts / service / threedbeacons / TDB_FTSData.java

diff --git a/src/jalview/fts/service/threedbeacons/TDB_FTSData.java b/src/jalview/fts/service/threedbeacons/TDB_FTSData.java
new file mode 100644 (file)
index 0000000..6745bb8
--- /dev/null
+++ b/src/jalview/fts/service/threedbeacons/TDB_FTSData.java
@@ -0,0 +1,120 @@
+package jalview.fts.service.threedbeacons;
+
+import java.util.Map;
+import java.util.Objects;
+
+import jalview.fts.api.FTSData;
+
+/**
+ * TDB result bean - holds filtered fields for GUI and essential metadata fields
+ * for back end
+ * 
+ * @author jprocter
+ *
+ */
+public class TDB_FTSData implements FTSData
+{
+  String primaryKey;
+
+  Object[] summaryRowData;
+
+  /*
+   * fields in the JSON object 
+   */
+  public static String Uniprot_Id= "id";
+  public static String Uniprot_Start= "uniprot_start";
+  public static String Uniprot_End= "uniprot_end";
+  public static String Provider= "provider";
+  public static String Model_id= "model_identifier";
+  public static String Model_Category= "model_category";
+  public static String Model_Type= "model_type";
+  public static String Model_Title="model_title";
+  public static String Resolution= "resolution";
+  public static String Confidence= "confidence_avg_local_score";
+  public static String Confidence_Score_Type= "confidence_type";
+  public static String Confidence_Score_Version= "confidence_version";
+  public static String Coverage= "coverage";
+  public static String Sequence_Identity= "sequence_identity";
+  public static String Created_Date= "created";
+  public static String UniProt_Accession= "uniprot_accession";
+  public static String Url= "model_url";
+  public static String Page_URL= "model_page_url";
+  public static String Ensemble_Sample_Url= "ensembl_sample_url";
+
+  /**
+   * original response from server
+   */
+  Map<String, Object> tdb_entry;
+
+  public TDB_FTSData(String primaryKey,
+          Map<String, Object> tdbJsonStructure, Object[] summaryData)
+  {
+    this.primaryKey = primaryKey;
+    tdb_entry = tdbJsonStructure;
+    this.summaryRowData = summaryData;
+  }
+
+  public Object getField(String key)
+  {
+    return tdb_entry.get(key);
+  }
+
+  @Override
+  public Object[] getSummaryData()
+  {
+    return summaryRowData;
+  }
+
+  @Override
+  public Object getPrimaryKey()
+  {
+    return primaryKey;
+  }
+
+  /**
+   * Returns a string representation of this object;
+   */
+  @Override
+  public String toString()
+  {
+    StringBuilder summaryFieldValues = new StringBuilder();
+    for (Object summaryField : summaryRowData)
+    {
+      summaryFieldValues
+              .append(summaryField == null ? " " : summaryField.toString())
+              .append("\t");
+    }
+    return summaryFieldValues.toString();
+  }
+
+  /**
+   * Returns hash code value for this object
+   */
+  @Override
+  public int hashCode()
+  {
+    return Objects.hash(primaryKey, this.toString());
+  }
+
+  @Override
+  public boolean equals(Object that)
+  {
+    return this.toString().equals(that.toString());
+  }
+
+  public String getProvider()
+  {
+    return (String) getField(Provider);
+  }
+
+  public String getModelViewUrl()
+  {
+    return (String) getField(Page_URL);
+  }
+
+  public String getModelId()
+  {
+    return (String) getField(Model_id);
+  }
+
+}