add HMMER colour scheme

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 2140ed9..080e260 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -4654,7 +4654,13 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           {
             HMMFile hmm = new HMMFile(new FileParse(file, sourceType));
             hmm.parse();
-            System.out.println("successful");
+
+            getViewport().getAlignment().setHMM(hmm.getHMM());
+
+
+
+
+
           }
           else if (FileFormat.Jnet.equals(format))
           {