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JAL-2850 JAL-1766 option to load contig sequence referenced by VCF
[jalview.git] / src / jalview / gui / AlignFrame.java
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5b812c2..8a44f27 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5603,7 +5603,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     {
       String choice = chooser.getSelectedFile().getPath();
       Cache.setProperty("LAST_DIRECTORY", choice);
-      new VCFLoader(viewport.getAlignment()).loadVCF(choice, this);
+      SequenceI[] seqs = viewport.getAlignment().getSequencesArray();
+      new VCFLoader(choice).loadVCF(seqs, this);
     }
 
   }