Start merging of Laurens Code

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 06272c3..fc2fe24 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -65,6 +65,7 @@ import jalview.schemes.HelixColourScheme;
 import jalview.schemes.HydrophobicColourScheme;
 import jalview.schemes.NucleotideColourScheme;
 import jalview.schemes.PIDColourScheme;
+import jalview.schemes.PurinePyrimidineColourScheme;
 import jalview.schemes.ResidueProperties;
 import jalview.schemes.StrandColourScheme;
 import jalview.schemes.TaylorColourScheme;
@@ -2964,10 +2965,25 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     changeColour(new NucleotideColourScheme());
   }
 
+  public void purinePyrimidineColour_actionPerformed(ActionEvent e)
+  {
+    changeColour(new PurinePyrimidineColourScheme());
+  }
+  /*
+  public void covariationColour_actionPerformed(ActionEvent e)
+  {
+    changeColour(new CovariationColourScheme(viewport.alignment.getAlignmentAnnotation()[0]));
+  }
+  */
   public void annotationColour_actionPerformed(ActionEvent e)
   {
     new AnnotationColourChooser(viewport, alignPanel);
   }
+  
+  public void rnahelicesColour_actionPerformed(ActionEvent e)
+  {
+    new RNAHelicesColourChooser(viewport, alignPanel);
+  }
 
   /**
    * DOCUMENT ME!