JAL-885; hasRNAStructure method was introduced to AlignmentI and

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 0a9cad4..b056fec 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -413,7 +413,7 @@ public class AlignViewport implements SelectionSource, VamsasSource
       consensus.hasText = true;
       consensus.autoCalculated = true;
 
-      if (alignment.isNucleotide())
+      if (alignment.isNucleotide() && alignment.hasRNAStructure())
       {
         strucConsensus = new AlignmentAnnotation("StrucConsensus", "PID",
                 new Annotation[1], 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
@@ -425,7 +425,7 @@ public class AlignViewport implements SelectionSource, VamsasSource
       {
         alignment.addAnnotation(consensus);
         // TODO: Make own if for structure
-        if (alignment.isNucleotide())
+        if (alignment.isNucleotide() && alignment.hasRNAStructure())
         {
           alignment.addAnnotation(strucConsensus);
         }