JAL-3377 Javadoc added for getWrappedHeight()

[jalview.git] / src / jalview / gui / AlignmentPanel.java

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 51e703d..1a133f3 100644 (file)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -532,7 +532,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     addNotify();
     // TODO: many places call this method and also paintAlignment with various
     // different settings. this means multiple redraws are triggered...
-    paintAlignment(true, false);
+    paintAlignment(true, av.needToUpdateStructureViews());
   }
 
   /**
@@ -1414,6 +1414,12 @@ public class AlignmentPanel extends GAlignmentPanel implements
 
   }
 
+  /**
+   * Answers the height of the entire alignment in pixels, assuming it is in
+   * wrapped mode
+   * 
+   * @return
+   */
   int getWrappedHeight()
   {
     int seqPanelWidth = getSeqPanel().seqCanvas.getWidth();
@@ -1438,6 +1444,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     int annotationHeight = 0;
     if (av.isShowAnnotation())
     {
+      hgap += SeqCanvas.SEQS_ANNOTATION_GAP;
       annotationHeight = getAnnotationPanel().adjustPanelHeight();
     }