JAL-1759 merge from develop

[jalview.git] / src / jalview / gui / AppVarnaBinding.java

diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java
index 956c2e1..25af7d1 100644 (file)
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -20,6 +20,11 @@
  */
 package jalview.gui;
 
+import jalview.datamodel.SequenceI;
+import jalview.ext.varna.JalviewVarnaBinding;
+import jalview.structure.AtomSpec;
+import jalview.util.MessageManager;
+
 import java.awt.BorderLayout;
 import java.awt.Color;
 import java.awt.Component;
@@ -59,38 +64,10 @@ import fr.orsay.lri.varna.models.FullBackup;
 import fr.orsay.lri.varna.models.VARNAConfig;
 import fr.orsay.lri.varna.models.rna.RNA;
 
-import jalview.datamodel.SequenceI;
-import jalview.ext.varna.JalviewVarnaBinding;
-import jalview.structure.AtomSpec;
-import jalview.util.MessageManager;
-
 public class AppVarnaBinding extends JalviewVarnaBinding
 {
   public VARNAPanel vp;
 
-  // remove unused (commented out) fields?
-  // protected JPanel _tools = new JPanel();
-  //
-  // private JPanel _input = new JPanel();
-  //
-  // private JPanel _strPanel = new JPanel();
-  //
-  // private JTextField _str = new JTextField();
-  //
-  // private JTextField _seq = new JTextField();
-  //
-  // private JLabel _strLabel = new JLabel(
-  // MessageManager.getString("label.str"));
-  //
-  // private JButton _updateButton = new JButton(
-  // MessageManager.getString("action.update"));
-  //
-  // private JButton _deleteButton = new JButton(
-  // MessageManager.getString("action.delete"));
-  //
-  // private JButton _duplicateButton = new JButton(
-  // MessageManager.getString("action.snapshot"));
-  //
   protected JPanel _listPanel = new JPanel();
 
   private ReorderableJList _sideList = null;
@@ -165,48 +142,6 @@ public class AppVarnaBinding extends JalviewVarnaBinding
 
     vp.setBackground(_backgroundColor);
 
-    // MC commented out stuff not added to panel - remove?
-    // Font textFieldsFont = Font.decode("MonoSpaced-PLAIN-12");
-    //
-    // _seq.setFont(textFieldsFont);
-    // if (!rnaList.isEmpty())
-    // {
-    // _seq.setText(rnaList.get(0).getSeq());
-    // }
-
-    // _updateButton.addActionListener(new ActionListener()
-    // {
-    // public void actionPerformed(ActionEvent e)
-    // {
-    // FullBackup sel = (FullBackup) _sideList.getSelectedValue();
-    // sel.rna.setSequence("A");
-    // }
-    // });
-    //
-    // _strLabel.setPreferredSize(new Dimension(marginTools, 15));
-    // _strLabel.setHorizontalTextPosition(JLabel.LEFT);
-    // _str.setFont(textFieldsFont);
-    // _strPanel.setLayout(new BorderLayout());
-    // _strPanel.add(_strLabel, BorderLayout.WEST);
-    // _strPanel.add(_str, BorderLayout.CENTER);
-    //
-    // _input.setLayout(new GridLayout(1, 0));
-    // _input.add(_strPanel);
-    //
-    // JPanel goPanel = new JPanel();
-    // goPanel.setLayout(new BorderLayout());
-    //
-    // _tools.setLayout(new BorderLayout());
-    // _tools.add(_input, BorderLayout.CENTER);
-    // _tools.add(goPanel, BorderLayout.EAST);
-    //
-    // goPanel.add(_updateButton, BorderLayout.CENTER);
-    //
-    // JPanel ops = new JPanel();
-    // ops.setLayout(new GridLayout(1, 2));
-    // ops.add(_deleteButton);
-    // ops.add(_duplicateButton);
-
     JLabel j = new JLabel(
             MessageManager.getString("label.structures_manager"),
             JLabel.CENTER);