Merge remote-tracking branch 'origin/releases/Release_2_10_2b1_Branch'

[jalview.git] / src / jalview / gui / CrossRefAction.java

diff --git a/src/jalview/gui/CrossRefAction.java b/src/jalview/gui/CrossRefAction.java
index 7768b22..01ee1ff 100644 (file)
--- a/src/jalview/gui/CrossRefAction.java
+++ b/src/jalview/gui/CrossRefAction.java
@@ -67,10 +67,9 @@ public class CrossRefAction implements Runnable
   public void run()
   {
     final long sttime = System.currentTimeMillis();
-    alignFrame.setProgressBar(
-            MessageManager.formatMessage(
-                    "status.searching_for_sequences_from",
-                    new Object[] { source }), sttime);
+    alignFrame.setProgressBar(MessageManager.formatMessage(
+            "status.searching_for_sequences_from", new Object[]
+            { source }), sttime);
     try
     {
       AlignmentI alignment = alignFrame.getViewport().getAlignment();
@@ -85,8 +84,8 @@ public class CrossRefAction implements Runnable
                         + " now searching for " + (dna ? "DNA" : "Protein")
                         + " Context.");
       }
-      AlignmentI xrefs = new CrossRef(sel, dataset).findXrefSequences(
-              source, dna);
+      AlignmentI xrefs = new CrossRef(sel, dataset)
+              .findXrefSequences(source, dna);
       if (xrefs == null)
       {
         return;
@@ -159,8 +158,8 @@ public class CrossRefAction implements Runnable
 
         if (copyAlignment.getHeight() <= 0)
         {
-          System.err.println("No Sequences generated for xRef type "
-                  + source);
+          System.err.println(
+                  "No Sequences generated for xRef type " + source);
           return;
         }
         /*
@@ -258,8 +257,8 @@ public class CrossRefAction implements Runnable
     } finally
     {
       alignFrame.setProgressBar(MessageManager.formatMessage(
-              "status.finished_searching_for_sequences_from",
-              new Object[] { source }), sttime);
+              "status.finished_searching_for_sequences_from", new Object[]
+              { source }), sttime);
     }
   }
 
@@ -280,9 +279,8 @@ public class CrossRefAction implements Runnable
     for (int s = 0; s < sprods.length; s++)
     {
       sprods[s] = (seqs.getSequenceAt(s)).deriveSequence();
-      if (dataset.getSequences() == null
-              || !dataset.getSequences().contains(
-                      sprods[s].getDatasetSequence()))
+      if (dataset.getSequences() == null || !dataset.getSequences()
+              .contains(sprods[s].getDatasetSequence()))
       {
         dataset.addSequence(sprods[s].getDatasetSequence());
       }