JAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disables jalview pinging www.jalvie...

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index ad36492..429a2c1 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -140,24 +140,32 @@ import jalview.ws.utils.UrlDownloadClient;
 public class Desktop extends jalview.jbgui.GDesktop
     implements DropTargetListener, ClipboardOwner, IProgressIndicator, jalview.api.StructureSelectionManagerProvider {
   private static final String CITATION;
-  static {
-    URL bg_logo_url = ChannelProperties.getImageURL("bg_logo." + String.valueOf(SplashScreen.logoSize));
-    URL uod_logo_url = ChannelProperties.getImageURL("uod_banner." + String.valueOf(SplashScreen.logoSize));
+  static
+  {
+    URL bg_logo_url = ChannelProperties.getImageURL(
+            "bg_logo." + String.valueOf(SplashScreen.logoSize));
+    URL uod_logo_url = ChannelProperties.getImageURL(
+            "uod_banner." + String.valueOf(SplashScreen.logoSize));
     boolean logo = (bg_logo_url != null || uod_logo_url != null);
     StringBuilder sb = new StringBuilder();
-    sb.append("<br><br>Development managed by The Barton Group, University of Dundee, Scotland, UK.");
-    if (logo) {
+    sb.append(
+            "<br><br>Jalview is free software released under GPLv3.<br><br>Development is managed by The Barton Group, University of Dundee, Scotland, UK.");
+    if (logo)
+    {
       sb.append("<br>");
     }
-    sb.append(bg_logo_url == null ? "" : "<img alt=\"Barton Group logo\" src=\"" + bg_logo_url.toString() + "\">");
+    sb.append(bg_logo_url == null ? ""
+            : "<img alt=\"Barton Group logo\" src=\""
+                    + bg_logo_url.toString() + "\">");
     sb.append(uod_logo_url == null ? ""
-        : "&nbsp;<img alt=\"University of Dundee shield\" src=\"" + uod_logo_url.toString() + "\">");
+            : "&nbsp;<img alt=\"University of Dundee shield\" src=\""
+                    + uod_logo_url.toString() + "\">");
     sb.append(
-        "<br><br>For help, see the FAQ at <a href=\"https://www.jalview.org/faq\">www.jalview.org/faq</a> and/or join the jalview-discuss@jalview.org mailing list");
+            "<br><br>For help, see <a href=\"https://www.jalview.org/faq\">www.jalview.org/faq</a> and join <a href=\"https://discourse.jalview.org\">discourse.jalview.org</a>");
     sb.append("<br><br>If  you use Jalview, please cite:"
-        + "<br>Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)"
-        + "<br>Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
-        + "<br>Bioinformatics doi: 10.1093/bioinformatics/btp033");
+            + "<br>Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)"
+            + "<br>Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
+            + "<br>Bioinformatics <a href=\"https://doi.org/10.1093/bioinformatics/btp033\">doi: 10.1093/bioinformatics/btp033</a>");
     CITATION = sb.toString();
   }
 
@@ -574,20 +582,28 @@ public class Desktop extends jalview.jbgui.GDesktop
     }).start();
   }
 
-  public void getIdentifiersOrgData() {
-    if (Cache.getProperty("NOIDENTIFIERSSERVICE") == null) {
-      // Thread off the identifiers fetcher
-      new Thread(new Runnable() {
+  public void getIdentifiersOrgData()
+  {
+    if (Cache.getProperty("NOIDENTIFIERSSERVICE") == null)
+    {// Thread off the identifiers fetcher
+      new Thread(new Runnable()
+      {
         @Override
-        public void run() {
+        public void run()
+        {
           jalview.bin.Console.debug("Downloading data from identifiers.org");
-          try {
-            UrlDownloadClient.download(IdOrgSettings.getUrl(), IdOrgSettings.getDownloadLocation());
-          } catch (IOException e) {
-            jalview.bin.Console.debug("Exception downloading identifiers.org data" + e.getMessage());
+          try
+          {
+            UrlDownloadClient.download(IdOrgSettings.getUrl(),
+                    IdOrgSettings.getDownloadLocation());
+          } catch (IOException e)
+          {
+            jalview.bin.Console.debug("Exception downloading identifiers.org data"
+                    + e.getMessage());
           }
         }
       }).start();
+      ;
     }
   }