Merge branch 'features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview' into...

[jalview.git] / src / jalview / gui / FeatureColourChooser.java

diff --git a/src/jalview/gui/FeatureColourChooser.java b/src/jalview/gui/FeatureColourChooser.java
index b27328d..d8db546 100644 (file)
--- a/src/jalview/gui/FeatureColourChooser.java
+++ b/src/jalview/gui/FeatureColourChooser.java
@@ -147,7 +147,7 @@ public class FeatureColourChooser extends JalviewDialog
          */
         if (ap != null)
         {
-          ap.paintAlignment(true);
+          ap.paintAlignment(true, true);
         }
       }
     });
@@ -396,9 +396,9 @@ public class FeatureColourChooser extends JalviewDialog
    * feature type, and repaints the alignment, and optionally the Overview
    * and/or structure viewer if open
    * 
-   * @param updateOverview
+   * @param updateStructsAndOverview
    */
-  void changeColour(boolean updateOverview)
+  void changeColour(boolean updateStructsAndOverview)
   {
     // Check if combobox is still adjusting
     if (adjusting)
@@ -507,7 +507,7 @@ public class FeatureColourChooser extends JalviewDialog
     }
     fr.setColour(type, acg);
     cs = acg;
-    ap.paintAlignment(updateOverview);
+    ap.paintAlignment(updateStructsAndOverview, updateStructsAndOverview);
   }
 
   @Override
@@ -539,7 +539,7 @@ public class FeatureColourChooser extends JalviewDialog
   void reset()
   {
     fr.setColour(type, oldcs);
-    ap.paintAlignment(true);
+    ap.paintAlignment(true, true);
     cs = null;
   }
 
@@ -565,7 +565,7 @@ public class FeatureColourChooser extends JalviewDialog
       /*
        * force repaint of any Overview window or structure
        */
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     } catch (NumberFormatException ex)
     {
     }