Use paintAlignment

[jalview.git] / src / jalview / gui / FeatureSettings.java

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 955684c..63b02cb 100755 (executable)
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -376,7 +376,7 @@ public class FeatureSettings
         }\r
 \r
         setTableData();\r
-        af.alignPanel.repaint();\r
+        af.alignPanel.paintAlignment(true);\r
       }\r
       catch (Exception ex)\r
       {\r
@@ -456,7 +456,7 @@ public class FeatureSettings
   public void updateFeatureRenderer(Object[][] data)\r
   {\r
     fr.setFeaturePriority(data);\r
-    af.alignPanel.repaint();\r
+    af.alignPanel.paintAlignment(true);\r
 \r
     if (af.alignPanel.overviewPanel != null)\r
     {\r
@@ -539,7 +539,7 @@ public class FeatureSettings
       public void stateChanged(ChangeEvent evt)\r
       {\r
         fr.setTransparency( (float) (100 - transparency.getValue()) / 100f);\r
-        af.alignPanel.repaint();\r
+        af.alignPanel.paintAlignment(true);\r
       }\r
     });\r
 \r