JAL-2418 source formatting

[jalview.git] / src / jalview / gui / OverviewPanel.java

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index c81ac2f..28de801 100755 (executable)
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -51,8 +51,8 @@ import javax.swing.SwingUtilities;
  * @author $author$
  * @version $Revision$
  */
-public class OverviewPanel extends JPanel implements Runnable,
-        ViewportListenerI
+public class OverviewPanel extends JPanel
+        implements Runnable, ViewportListenerI
 {
   private OverviewDimensions od;
 
@@ -80,8 +80,8 @@ public class OverviewPanel extends JPanel implements Runnable,
     this.ap = alPanel;
 
     od = new OverviewDimensionsShowHidden(av.getRanges(),
-            (av.isShowAnnotation() && av
-                    .getAlignmentConservationAnnotation() != null));
+            (av.isShowAnnotation()
+                    && av.getAlignmentConservationAnnotation() != null));
 
     setSize(od.getWidth(), od.getHeight());
 
@@ -116,15 +116,15 @@ public class OverviewPanel extends JPanel implements Runnable,
           {
             // set the mouse position as a fixed point in the box
             // and drag relative to that position
-            od.adjustViewportFromMouse(evt.getX(),
-                    evt.getY(), av.getAlignment().getHiddenSequences(),
+            od.adjustViewportFromMouse(evt.getX(), evt.getY(),
+                    av.getAlignment().getHiddenSequences(),
                     av.getAlignment().getHiddenColumns());
           }
           else
           {
-            od.updateViewportFromMouse(evt.getX(), evt.getY(), av
-                  .getAlignment().getHiddenSequences(), av.getAlignment()
-                  .getHiddenColumns());
+            od.updateViewportFromMouse(evt.getX(), evt.getY(),
+                    av.getAlignment().getHiddenSequences(),
+                    av.getAlignment().getHiddenColumns());
           }
         }
       }
@@ -235,15 +235,15 @@ public class OverviewPanel extends JPanel implements Runnable,
     {
       showHidden = false;
       od = new OverviewDimensionsHideHidden(av.getRanges(),
-              (av.isShowAnnotation() && av
-                      .getAlignmentConservationAnnotation() != null));
+              (av.isShowAnnotation()
+                      && av.getAlignmentConservationAnnotation() != null));
     }
     else
     {
       showHidden = true;
       od = new OverviewDimensionsShowHidden(av.getRanges(),
-              (av.isShowAnnotation() && av
-                      .getAlignmentConservationAnnotation() != null));
+              (av.isShowAnnotation()
+                      && av.getAlignmentConservationAnnotation() != null));
     }
     oviewCanvas.resetOviewDims(od);
     updateOverviewImage();
@@ -268,7 +268,7 @@ public class OverviewPanel extends JPanel implements Runnable,
       od.setWidth(getWidth());
       od.setHeight(getHeight());
     }
-    
+
     setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
 
     if (oviewCanvas.restartDraw())
@@ -285,9 +285,9 @@ public class OverviewPanel extends JPanel implements Runnable,
   public void run()
   {
     oviewCanvas.draw(av.isShowSequenceFeatures(),
-            (av.isShowAnnotation() && av
-                    .getAlignmentConservationAnnotation() != null), ap
-                    .getSeqPanel().seqCanvas.getFeatureRenderer());
+            (av.isShowAnnotation()
+                    && av.getAlignmentConservationAnnotation() != null),
+            ap.getSeqPanel().seqCanvas.getFeatureRenderer());
     setBoxPosition();
   }
 
@@ -298,8 +298,8 @@ public class OverviewPanel extends JPanel implements Runnable,
    */
   private void setBoxPosition()
   {
-    od.setBoxPosition(av.getAlignment().getHiddenSequences(), av
-            .getAlignment().getHiddenColumns());
+    od.setBoxPosition(av.getAlignment().getHiddenSequences(),
+            av.getAlignment().getHiddenColumns());
     repaint();
   }