JAL-1013 - toy menu to switch between nucleotide and blosum 62 modes of calculation...

[jalview.git] / src / jalview / gui / PCAPanel.java

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index 4948c22..eec9b6d 100755 (executable)
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -135,6 +135,7 @@ public class PCAPanel extends GPCAPanel implements Runnable
   {
     try
     {
+      calcSettings.setEnabled(false);
       pca = new PCA(seqstrings.getSequenceStrings(' '), useidentity);
       pca.run();
 
@@ -182,9 +183,22 @@ public class PCAPanel extends GPCAPanel implements Runnable
       new OOMWarning("calculating PCA", er);
 
     }
-
+    calcSettings.setEnabled(true);
+  }
+  @Override
+  protected void nuclSetting_actionPerfomed(ActionEvent arg0)
+  {
+    useidentity=true;
+    Thread worker = new Thread(this);
+    worker.start();
+  }
+  @Override
+  protected void protSetting_actionPerfomed(ActionEvent arg0)
+  {
+    useidentity=false;
+    Thread worker = new Thread(this);
+    worker.start();
   }
-
   /**
    * DOCUMENT ME!
    */