JAL-1517 source formatting

[jalview.git] / src / jalview / gui / Preferences.java

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index bc456ad..4f52f52 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.gui;
@@ -88,9 +90,10 @@ public class Preferences extends GPreferences
               .indexOf("SRS|http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-newId+(([uniprot-all:$SEQUENCE_ID$]))+-view+SwissEntry");
       if (srsPos > -1)
       {
-        sequenceURLLinks.setElementAt(
-                "EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$",
-                srsPos);
+        sequenceURLLinks
+                .setElementAt(
+                        "EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$",
+                        srsPos);
       }
     }
 
@@ -100,9 +103,6 @@ public class Preferences extends GPreferences
      */
 
     groupURLLinks = new Vector();
-    // groupURLLinks.addElement("UNIPROT|EnVision2|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?tool=Jalview&workflow=Default&datasetName=JalviewIDs$DATASETID$&input=$SEQUENCEIDS$&inputType=0|,");
-    // groupURLLinks.addElement("Seqs|EnVision2|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?tool=Jalview&workflow=Default&datasetName=JalviewSeqs$DATASETID$&input=$SEQUENCES=/([A-Za-z]+)+/=$&inputType=1|,");
-
   }
 
   Vector nameLinks, urlLinks;
@@ -132,7 +132,8 @@ public class Preferences extends GPreferences
       height = 460;
     }
 
-    Desktop.addInternalFrame(frame, "Preferences", width, height);
+    Desktop.addInternalFrame(frame,
+            MessageManager.getString("label.preferences"), width, height);
     frame.setMinimumSize(new Dimension(width, height));
 
     seqLimit.setSelected(Cache.getDefault("SHOW_JVSUFFIX", true));
@@ -567,8 +568,8 @@ public class Preferences extends GPreferences
     while (!valid)
     {
       if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,
-              MessageManager.getString("label.new_sequence_url_link"), JOptionPane.OK_CANCEL_OPTION, -1,
-              null) == JOptionPane.OK_OPTION)
+              MessageManager.getString("label.new_sequence_url_link"),
+              JOptionPane.OK_CANCEL_OPTION, -1, null) == JOptionPane.OK_OPTION)
       {
         if (link.checkValid())
         {
@@ -593,7 +594,8 @@ public class Preferences extends GPreferences
     if (index == -1)
     {
       JOptionPane.showInternalMessageDialog(Desktop.desktop,
-              MessageManager.getString("label.no_link_selected"), MessageManager.getString("label.no_link_selected"),
+              MessageManager.getString("label.no_link_selected"),
+              MessageManager.getString("label.no_link_selected"),
               JOptionPane.WARNING_MESSAGE);
       return;
     }
@@ -606,8 +608,8 @@ public class Preferences extends GPreferences
     {
 
       if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,
-              MessageManager.getString("label.new_sequence_url_link"), JOptionPane.OK_CANCEL_OPTION, -1,
-              null) == JOptionPane.OK_OPTION)
+              MessageManager.getString("label.new_sequence_url_link"),
+              JOptionPane.OK_CANCEL_OPTION, -1, null) == JOptionPane.OK_OPTION)
       {
         if (link.checkValid())
         {
@@ -631,7 +633,8 @@ public class Preferences extends GPreferences
     if (index == -1)
     {
       JOptionPane.showInternalMessageDialog(Desktop.desktop,
-              MessageManager.getString("label.no_link_selected"), MessageManager.getString("label.no_link_selected"),
+              MessageManager.getString("label.no_link_selected"),
+              MessageManager.getString("label.no_link_selected"),
               JOptionPane.WARNING_MESSAGE);
       return;
     }