/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
*/\r
package jalview.gui;\r
\r
-import jalview.datamodel.*;\r
-\r
-import jalview.math.*;\r
+import java.util.*;\r
\r
import java.awt.*;\r
import java.awt.event.*;\r
-\r
-import java.util.*;\r
-\r
import javax.swing.*;\r
\r
+import jalview.datamodel.*;\r
+import jalview.math.*;\r
\r
/**\r
* DOCUMENT ME!\r
* @author $author$\r
* @version $Revision$\r
*/\r
-public class RotatableCanvas extends JPanel implements MouseListener,\r
+public class RotatableCanvas\r
+ extends JPanel implements MouseListener,\r
MouseMotionListener, KeyListener\r
{\r
- RotatableMatrix idmat = new RotatableMatrix(3, 3);\r
- RotatableMatrix objmat = new RotatableMatrix(3, 3);\r
- RotatableMatrix rotmat = new RotatableMatrix(3, 3);\r
-\r
- //RubberbandRectangle rubberband;\r
- boolean drawAxes = true;\r
- int omx = 0;\r
- int mx = 0;\r
- int omy = 0;\r
- int my = 0;\r
- Image img;\r
- Graphics ig;\r
- Dimension prefsize;\r
- float[] centre = new float[3];\r
- float[] width = new float[3];\r
- float[] max = new float[3];\r
- float[] min = new float[3];\r
- float maxwidth;\r
- float scale;\r
- int npoint;\r
- Vector points;\r
- float[][] orig;\r
- float[][] axes;\r
- int startx;\r
- int starty;\r
- int lastx;\r
- int lasty;\r
- int rectx1;\r
- int recty1;\r
- int rectx2;\r
- int recty2;\r
- float scalefactor = 1;\r
- AlignViewport av;\r
- AlignmentPanel ap;\r
- boolean showLabels = false;\r
- Color bgColour = Color.black;\r
- boolean applyToAllViews = false;\r
-\r
- // Controller controller;\r
- public RotatableCanvas(AlignmentPanel ap)\r
+ RotatableMatrix idmat = new RotatableMatrix(3, 3);\r
+ RotatableMatrix objmat = new RotatableMatrix(3, 3);\r
+ RotatableMatrix rotmat = new RotatableMatrix(3, 3);\r
+\r
+ //RubberbandRectangle rubberband;\r
+ boolean drawAxes = true;\r
+ int omx = 0;\r
+ int mx = 0;\r
+ int omy = 0;\r
+ int my = 0;\r
+ Image img;\r
+ Graphics ig;\r
+ Dimension prefsize;\r
+ float[] centre = new float[3];\r
+ float[] width = new float[3];\r
+ float[] max = new float[3];\r
+ float[] min = new float[3];\r
+ float maxwidth;\r
+ float scale;\r
+ int npoint;\r
+ Vector points;\r
+ float[][] orig;\r
+ float[][] axes;\r
+ int startx;\r
+ int starty;\r
+ int lastx;\r
+ int lasty;\r
+ int rectx1;\r
+ int recty1;\r
+ int rectx2;\r
+ int recty2;\r
+ float scalefactor = 1;\r
+ AlignViewport av;\r
+ AlignmentPanel ap;\r
+ boolean showLabels = false;\r
+ Color bgColour = Color.black;\r
+ boolean applyToAllViews = false;\r
+\r
+ // Controller controller;\r
+ public RotatableCanvas(AlignmentPanel ap)\r
+ {\r
+ this.av = ap.av;\r
+ this.ap = ap;\r
+\r
+ addMouseWheelListener(new MouseWheelListener()\r
{\r
- this.av = ap.av;\r
- this.ap = ap;\r
-\r
- addMouseWheelListener(new MouseWheelListener()\r
+ public void mouseWheelMoved(MouseWheelEvent e)\r
{\r
- public void mouseWheelMoved(MouseWheelEvent e)\r
- {\r
- if (e.getWheelRotation() > 0)\r
- {\r
- scale = (float) (scale * 1.1);\r
- repaint();\r
- }\r
-\r
- else\r
- {\r
- scale = (float) (scale * 0.9);\r
- repaint();\r
- }\r
- }\r
- });\r
-\r
- }\r
-\r
- public void showLabels(boolean b)\r
- {\r
- showLabels = b;\r
- repaint();\r
- }\r
-\r
- public void setPoints(Vector points, int npoint)\r
- {\r
- this.points = points;\r
- this.npoint = npoint;\r
- ToolTipManager.sharedInstance().registerComponent(this);\r
- ToolTipManager.sharedInstance().setInitialDelay(0);\r
- ToolTipManager.sharedInstance().setDismissDelay(10000);\r
-\r
- prefsize = getPreferredSize();\r
- orig = new float[npoint][3];\r
-\r
- for (int i = 0; i < npoint; i++)\r
+ if (e.getWheelRotation() > 0)\r
{\r
- SequencePoint sp = (SequencePoint) points.elementAt(i);\r
-\r
- for (int j = 0; j < 3; j++)\r
- {\r
- orig[i][j] = sp.coord[j];\r
- }\r
+ scale = (float) (scale * 1.1);\r
+ repaint();\r
}\r
\r
- //Initialize the matrices to identity\r
- for (int i = 0; i < 3; i++)\r
+ else\r
{\r
- for (int j = 0; j < 3; j++)\r
- {\r
- if (i != j)\r
- {\r
- idmat.addElement(i, j, 0);\r
- objmat.addElement(i, j, 0);\r
- rotmat.addElement(i, j, 0);\r
- }\r
- else\r
- {\r
- idmat.addElement(i, j, 0);\r
- objmat.addElement(i, j, 0);\r
- rotmat.addElement(i, j, 0);\r
- }\r
- }\r
+ scale = (float) (scale * 0.9);\r
+ repaint();\r
}\r
+ }\r
+ });\r
\r
- axes = new float[3][3];\r
- initAxes();\r
+ }\r
\r
- findCentre();\r
- findWidth();\r
+ public void showLabels(boolean b)\r
+ {\r
+ showLabels = b;\r
+ repaint();\r
+ }\r
\r
- scale = findScale();\r
+ public void setPoints(Vector points, int npoint)\r
+ {\r
+ this.points = points;\r
+ this.npoint = npoint;\r
+ ToolTipManager.sharedInstance().registerComponent(this);\r
+ ToolTipManager.sharedInstance().setInitialDelay(0);\r
+ ToolTipManager.sharedInstance().setDismissDelay(10000);\r
\r
- addMouseListener(this);\r
+ prefsize = getPreferredSize();\r
+ orig = new float[npoint][3];\r
\r
- addMouseMotionListener(this);\r
+ for (int i = 0; i < npoint; i++)\r
+ {\r
+ SequencePoint sp = (SequencePoint) points.elementAt(i);\r
\r
+ for (int j = 0; j < 3; j++)\r
+ {\r
+ orig[i][j] = sp.coord[j];\r
+ }\r
}\r
\r
- public void initAxes()\r
+ //Initialize the matrices to identity\r
+ for (int i = 0; i < 3; i++)\r
{\r
- for (int i = 0; i < 3; i++)\r
+ for (int j = 0; j < 3; j++)\r
+ {\r
+ if (i != j)\r
{\r
- for (int j = 0; j < 3; j++)\r
- {\r
- if (i != j)\r
- {\r
- axes[i][j] = 0;\r
- }\r
- else\r
- {\r
- axes[i][j] = 1;\r
- }\r
- }\r
+ idmat.addElement(i, j, 0);\r
+ objmat.addElement(i, j, 0);\r
+ rotmat.addElement(i, j, 0);\r
}\r
+ else\r
+ {\r
+ idmat.addElement(i, j, 0);\r
+ objmat.addElement(i, j, 0);\r
+ rotmat.addElement(i, j, 0);\r
+ }\r
+ }\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public void findWidth()\r
- {\r
- max = new float[3];\r
- min = new float[3];\r
+ axes = new float[3][3];\r
+ initAxes();\r
\r
- max[0] = (float) -1e30;\r
- max[1] = (float) -1e30;\r
- max[2] = (float) -1e30;\r
+ findCentre();\r
+ findWidth();\r
\r
- min[0] = (float) 1e30;\r
- min[1] = (float) 1e30;\r
- min[2] = (float) 1e30;\r
+ scale = findScale();\r
\r
- for (int i = 0; i < 3; i++)\r
- {\r
- for (int j = 0; j < npoint; j++)\r
- {\r
- SequencePoint sp = (SequencePoint) points.elementAt(j);\r
-\r
- if (sp.coord[i] >= max[i])\r
- {\r
- max[i] = sp.coord[i];\r
- }\r
-\r
- if (sp.coord[i] <= min[i])\r
- {\r
- min[i] = sp.coord[i];\r
- }\r
- }\r
- }\r
+ addMouseListener(this);\r
\r
- // System.out.println("xmax " + max[0] + " min " + min[0]);\r
- //System.out.println("ymax " + max[1] + " min " + min[1]);\r
- //System.out.println("zmax " + max[2] + " min " + min[2]);\r
- width[0] = Math.abs(max[0] - min[0]);\r
- width[1] = Math.abs(max[1] - min[1]);\r
- width[2] = Math.abs(max[2] - min[2]);\r
+ addMouseMotionListener(this);\r
\r
- maxwidth = width[0];\r
+ }\r
\r
- if (width[1] > width[0])\r
+ public void initAxes()\r
+ {\r
+ for (int i = 0; i < 3; i++)\r
+ {\r
+ for (int j = 0; j < 3; j++)\r
+ {\r
+ if (i != j)\r
{\r
- maxwidth = width[1];\r
+ axes[i][j] = 0;\r
}\r
-\r
- if (width[2] > width[1])\r
+ else\r
{\r
- maxwidth = width[2];\r
+ axes[i][j] = 1;\r
}\r
-\r
- //System.out.println("Maxwidth = " + maxwidth);\r
+ }\r
}\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void findWidth()\r
+ {\r
+ max = new float[3];\r
+ min = new float[3];\r
+\r
+ max[0] = (float) - 1e30;\r
+ max[1] = (float) - 1e30;\r
+ max[2] = (float) - 1e30;\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public float findScale()\r
+ min[0] = (float) 1e30;\r
+ min[1] = (float) 1e30;\r
+ min[2] = (float) 1e30;\r
+\r
+ for (int i = 0; i < 3; i++)\r
{\r
- int dim;\r
- int width;\r
- int height;\r
+ for (int j = 0; j < npoint; j++)\r
+ {\r
+ SequencePoint sp = (SequencePoint) points.elementAt(j);\r
\r
- if (getWidth() != 0)\r
- {\r
- width = getWidth();\r
- height = getHeight();\r
- }\r
- else\r
+ if (sp.coord[i] >= max[i])\r
{\r
- width = prefsize.width;\r
- height = prefsize.height;\r
+ max[i] = sp.coord[i];\r
}\r
\r
- if (width < height)\r
- {\r
- dim = width;\r
- }\r
- else\r
+ if (sp.coord[i] <= min[i])\r
{\r
- dim = height;\r
+ min[i] = sp.coord[i];\r
}\r
-\r
- return (float) ((dim * scalefactor) / (2 * maxwidth));\r
+ }\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public void findCentre()\r
- {\r
- //Find centre coordinate\r
- findWidth();\r
+ // System.out.println("xmax " + max[0] + " min " + min[0]);\r
+ //System.out.println("ymax " + max[1] + " min " + min[1]);\r
+ //System.out.println("zmax " + max[2] + " min " + min[2]);\r
+ width[0] = Math.abs(max[0] - min[0]);\r
+ width[1] = Math.abs(max[1] - min[1]);\r
+ width[2] = Math.abs(max[2] - min[2]);\r
\r
- centre[0] = (max[0] + min[0]) / 2;\r
- centre[1] = (max[1] + min[1]) / 2;\r
- centre[2] = (max[2] + min[2]) / 2;\r
+ maxwidth = width[0];\r
\r
- // System.out.println("Centre x " + centre[0]);\r
- //System.out.println("Centre y " + centre[1]);\r
- //System.out.println("Centre z " + centre[2]);\r
+ if (width[1] > width[0])\r
+ {\r
+ maxwidth = width[1];\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public Dimension getPreferredSize()\r
+ if (width[2] > width[1])\r
{\r
- if (prefsize != null)\r
- {\r
- return prefsize;\r
- }\r
- else\r
- {\r
- return new Dimension(400, 400);\r
- }\r
+ maxwidth = width[2];\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public Dimension getMinimumSize()\r
+ //System.out.println("Maxwidth = " + maxwidth);\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public float findScale()\r
+ {\r
+ int dim;\r
+ int width;\r
+ int height;\r
+\r
+ if (getWidth() != 0)\r
{\r
- return getPreferredSize();\r
+ width = getWidth();\r
+ height = getHeight();\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param g DOCUMENT ME!\r
- */\r
- public void paintComponent(Graphics g1)\r
+ else\r
{\r
+ width = prefsize.width;\r
+ height = prefsize.height;\r
+ }\r
\r
- Graphics2D g = (Graphics2D) g1;\r
+ if (width < height)\r
+ {\r
+ dim = width;\r
+ }\r
+ else\r
+ {\r
+ dim = height;\r
+ }\r
\r
- g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
- RenderingHints.VALUE_ANTIALIAS_ON);\r
- if(points==null)\r
- {\r
- g.setFont(new Font("Verdana", Font.PLAIN, 18));\r
- g.drawString("Calculating PCA....", 20, getHeight()/2);\r
- }\r
- else\r
+ return (float) ( (dim * scalefactor) / (2 * maxwidth));\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void findCentre()\r
+ {\r
+ //Find centre coordinate\r
+ findWidth();\r
+\r
+ centre[0] = (max[0] + min[0]) / 2;\r
+ centre[1] = (max[1] + min[1]) / 2;\r
+ centre[2] = (max[2] + min[2]) / 2;\r
+\r
+ // System.out.println("Centre x " + centre[0]);\r
+ //System.out.println("Centre y " + centre[1]);\r
+ //System.out.println("Centre z " + centre[2]);\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public Dimension getPreferredSize()\r
+ {\r
+ if (prefsize != null)\r
+ {\r
+ return prefsize;\r
+ }\r
+ else\r
+ {\r
+ return new Dimension(400, 400);\r
+ }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public Dimension getMinimumSize()\r
+ {\r
+ return getPreferredSize();\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ */\r
+ public void paintComponent(Graphics g1)\r
+ {\r
+\r
+ Graphics2D g = (Graphics2D) g1;\r
+\r
+ g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
+ RenderingHints.VALUE_ANTIALIAS_ON);\r
+ if (points == null)\r
+ {\r
+ g.setFont(new Font("Verdana", Font.PLAIN, 18));\r
+ g.drawString("Calculating PCA....", 20, getHeight() / 2);\r
+ }\r
+ else\r
+ {\r
+ //Only create the image at the beginning -\r
+ if ( (img == null) || (prefsize.width != getWidth()) ||\r
+ (prefsize.height != getHeight()))\r
{\r
- //Only create the image at the beginning -\r
- if ( (img == null) || (prefsize.width != getWidth()) ||\r
- (prefsize.height != getHeight()))\r
- {\r
- prefsize.width = getWidth();\r
- prefsize.height = getHeight();\r
-\r
- scale = findScale();\r
-\r
- // System.out.println("New scale = " + scale);\r
- img = createImage(getWidth(), getHeight());\r
- ig = img.getGraphics();\r
- }\r
+ prefsize.width = getWidth();\r
+ prefsize.height = getHeight();\r
\r
+ scale = findScale();\r
\r
- drawBackground(ig, bgColour);\r
- drawScene(ig);\r
+ // System.out.println("New scale = " + scale);\r
+ img = createImage(getWidth(), getHeight());\r
+ ig = img.getGraphics();\r
+ }\r
\r
- if (drawAxes == true)\r
- {\r
- drawAxes(ig);\r
- }\r
+ drawBackground(ig, bgColour);\r
+ drawScene(ig);\r
\r
- g.drawImage(img, 0, 0, this);\r
+ if (drawAxes == true)\r
+ {\r
+ drawAxes(ig);\r
}\r
- }\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param g DOCUMENT ME!\r
- */\r
- public void drawAxes(Graphics g)\r
- {\r
+ g.drawImage(img, 0, 0, this);\r
+ }\r
+ }\r
\r
- g.setColor(Color.yellow);\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ */\r
+ public void drawAxes(Graphics g)\r
+ {\r
\r
- for (int i = 0; i < 3; i++)\r
- {\r
- g.drawLine(getWidth() / 2, getHeight() / 2,\r
- (int) ((axes[i][0] * scale * max[0]) + (getWidth() / 2)),\r
- (int) ((axes[i][1] * scale * max[1]) + (getHeight() / 2)));\r
- }\r
- }\r
+ g.setColor(Color.yellow);\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param g DOCUMENT ME!\r
- * @param col DOCUMENT ME!\r
- */\r
- public void drawBackground(Graphics g, Color col)\r
+ for (int i = 0; i < 3; i++)\r
{\r
- g.setColor(col);\r
- g.fillRect(0, 0, prefsize.width, prefsize.height);\r
+ g.drawLine(getWidth() / 2, getHeight() / 2,\r
+ (int) ( (axes[i][0] * scale * max[0]) + (getWidth() / 2)),\r
+ (int) ( (axes[i][1] * scale * max[1]) + (getHeight() / 2)));\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param g DOCUMENT ME!\r
- */\r
- public void drawScene(Graphics g1)\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ * @param col DOCUMENT ME!\r
+ */\r
+ public void drawBackground(Graphics g, Color col)\r
+ {\r
+ g.setColor(col);\r
+ g.fillRect(0, 0, prefsize.width, prefsize.height);\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ */\r
+ public void drawScene(Graphics g1)\r
+ {\r
+\r
+ Graphics2D g = (Graphics2D) g1;\r
+\r
+ g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
+ RenderingHints.VALUE_ANTIALIAS_ON);\r
+\r
+ int halfwidth = getWidth() / 2;\r
+ int halfheight = getHeight() / 2;\r
+\r
+ for (int i = 0; i < npoint; i++)\r
{\r
+ SequencePoint sp = (SequencePoint) points.elementAt(i);\r
+ int x = (int) ( (float) (sp.coord[0] - centre[0]) * scale) +\r
+ halfwidth;\r
+ int y = (int) ( (float) (sp.coord[1] - centre[1]) * scale) +\r
+ halfheight;\r
+ float z = sp.coord[1] - centre[2];\r
+\r
+ if (av.getSequenceColour(sp.sequence) == Color.black)\r
+ {\r
+ g.setColor(Color.white);\r
+ }\r
+ else\r
+ {\r
+ g.setColor(av.getSequenceColour(sp.sequence));\r
+ }\r
\r
- Graphics2D g = (Graphics2D) g1;\r
-\r
- g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
- RenderingHints.VALUE_ANTIALIAS_ON);\r
-\r
-\r
- int halfwidth = getWidth() / 2;\r
- int halfheight = getHeight() / 2;\r
-\r
- for (int i = 0; i < npoint; i++)\r
+ if (av.getSelectionGroup() != null)\r
+ {\r
+ if (av.getSelectionGroup().getSequences(null).contains(\r
+ ( (SequencePoint) points.elementAt(i)).sequence))\r
{\r
- SequencePoint sp = (SequencePoint) points.elementAt(i);\r
- int x = (int) ((float) (sp.coord[0] - centre[0]) * scale) +\r
- halfwidth;\r
- int y = (int) ((float) (sp.coord[1] - centre[1]) * scale) +\r
- halfheight;\r
- float z = sp.coord[1] - centre[2];\r
-\r
- if (av.getSequenceColour(sp.sequence) == Color.black)\r
- {\r
- g.setColor(Color.white);\r
- }\r
- else\r
- {\r
- g.setColor(av.getSequenceColour(sp.sequence));\r
- }\r
-\r
- if (av.getSelectionGroup() != null)\r
- {\r
- if (av.getSelectionGroup().getSequences(null).contains(\r
- ((SequencePoint) points.elementAt(i)).sequence))\r
- {\r
- g.setColor(Color.gray);\r
- }\r
- }\r
-\r
- if (z < 0)\r
- {\r
- g.setColor(g.getColor().darker());\r
- }\r
-\r
- g.fillRect(x - 3, y - 3, 6, 6);\r
- if(showLabels)\r
- {\r
- g.setColor(Color.red);\r
- g.drawString( ( (SequencePoint) points.elementAt(i)).sequence.\r
- getName(),\r
- x - 3, y - 4);\r
- }\r
+ g.setColor(Color.gray);\r
}\r
+ }\r
\r
- // //Now the rectangle\r
- // if (rectx2 != -1 && recty2 != -1) {\r
- // g.setColor(Color.white);\r
- //\r
- // g.drawRect(rectx1,recty1,rectx2-rectx1,recty2-recty1);\r
- // }\r
- }\r
+ if (z < 0)\r
+ {\r
+ g.setColor(g.getColor().darker());\r
+ }\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public Dimension minimumsize()\r
- {\r
- return prefsize;\r
+ g.fillRect(x - 3, y - 3, 6, 6);\r
+ if (showLabels)\r
+ {\r
+ g.setColor(Color.red);\r
+ g.drawString( ( (SequencePoint) points.elementAt(i)).sequence.\r
+ getName(),\r
+ x - 3, y - 4);\r
+ }\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public Dimension preferredsize()\r
+ // //Now the rectangle\r
+ // if (rectx2 != -1 && recty2 != -1) {\r
+ // g.setColor(Color.white);\r
+ //\r
+ // g.drawRect(rectx1,recty1,rectx2-rectx1,recty2-recty1);\r
+ // }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public Dimension minimumsize()\r
+ {\r
+ return prefsize;\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public Dimension preferredsize()\r
+ {\r
+ return prefsize;\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void keyTyped(KeyEvent evt)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void keyReleased(KeyEvent evt)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void keyPressed(KeyEvent evt)\r
+ {\r
+ if (evt.getKeyCode() == KeyEvent.VK_UP)\r
{\r
- return prefsize;\r
+ scalefactor = (float) (scalefactor * 1.1);\r
+ scale = findScale();\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void keyTyped(KeyEvent evt)\r
+ else if (evt.getKeyCode() == KeyEvent.VK_DOWN)\r
{\r
+ scalefactor = (float) (scalefactor * 0.9);\r
+ scale = findScale();\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void keyReleased(KeyEvent evt)\r
+ else if (evt.getKeyChar() == 's')\r
{\r
+ System.err.println("DEBUG: Rectangle selection"); // log.debug\r
+\r
+ if ( (rectx2 != -1) && (recty2 != -1))\r
+ {\r
+ rectSelect(rectx1, recty1, rectx2, recty2);\r
+ }\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void keyPressed(KeyEvent evt)\r
+ repaint();\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mouseClicked(MouseEvent evt)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mouseEntered(MouseEvent evt)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mouseExited(MouseEvent evt)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mouseReleased(MouseEvent evt)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mousePressed(MouseEvent evt)\r
+ {\r
+ int x = evt.getX();\r
+ int y = evt.getY();\r
+\r
+ mx = x;\r
+ my = y;\r
+\r
+ omx = mx;\r
+ omy = my;\r
+\r
+ startx = x;\r
+ starty = y;\r
+\r
+ rectx1 = x;\r
+ recty1 = y;\r
+\r
+ rectx2 = -1;\r
+ recty2 = -1;\r
+\r
+ SequenceI found = findPoint(x, y);\r
+\r
+ if (found != null)\r
{\r
- if (evt.getKeyCode() == KeyEvent.VK_UP)\r
- {\r
- scalefactor = (float) (scalefactor * 1.1);\r
- scale = findScale();\r
- }\r
- else if (evt.getKeyCode() == KeyEvent.VK_DOWN)\r
+ AlignmentPanel[] aps = getAssociatedPanels();\r
+\r
+ for (int a = 0; a < aps.length; a++)\r
+ {\r
+ if (aps[a].av.getSelectionGroup() != null)\r
{\r
- scalefactor = (float) (scalefactor * 0.9);\r
- scale = findScale();\r
+ aps[a].av.getSelectionGroup().addOrRemove(found, true);\r
}\r
- else if (evt.getKeyChar() == 's')\r
+ else\r
{\r
- System.err.println("DEBUG: Rectangle selection"); // log.debug\r
-\r
- if ((rectx2 != -1) && (recty2 != -1))\r
- {\r
- rectSelect(rectx1, recty1, rectx2, recty2);\r
- }\r
+ aps[a].av.setSelectionGroup(new SequenceGroup());\r
+ aps[a].av.getSelectionGroup().addOrRemove(found, true);\r
+ aps[a].av.getSelectionGroup().setEndRes(\r
+ aps[a].av.alignment.getWidth() - 1);\r
}\r
+ }\r
\r
- repaint();\r
+ PaintRefresher.Refresh(this, av.getSequenceSetId());\r
}\r
\r
+ repaint();\r
+ }\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void mouseClicked(MouseEvent evt)\r
- {\r
- }\r
+ // private void fireSequenceSelectionEvent(Selection sel) {\r
+ // controller.handleSequenceSelectionEvent(new SequenceSelectionEvent(this,sel));\r
+ //}\r
+ public void mouseMoved(MouseEvent evt)\r
+ {\r
+ SequenceI found = findPoint(evt.getX(), evt.getY());\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void mouseEntered(MouseEvent evt)\r
+ if (found != null)\r
{\r
+ this.setToolTipText(found.getName());\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void mouseExited(MouseEvent evt)\r
+ else\r
{\r
+ this.setToolTipText(null);\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void mouseReleased(MouseEvent evt)\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mouseDragged(MouseEvent evt)\r
+ {\r
+ mx = evt.getX();\r
+ my = evt.getY();\r
+\r
+ //Check if this is a rectangle drawing drag\r
+ if ( (evt.getModifiers() & InputEvent.BUTTON2_MASK) != 0)\r
{\r
+ // rectx2 = evt.getX();\r
+ // recty2 = evt.getY();\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void mousePressed(MouseEvent evt)\r
+ else\r
{\r
- int x = evt.getX();\r
- int y = evt.getY();\r
-\r
- mx = x;\r
- my = y;\r
+ rotmat.setIdentity();\r
\r
- omx = mx;\r
- omy = my;\r
+ rotmat.rotate( (float) (my - omy), 'x');\r
+ rotmat.rotate( (float) (mx - omx), 'y');\r
\r
- startx = x;\r
- starty = y;\r
+ for (int i = 0; i < npoint; i++)\r
+ {\r
+ SequencePoint sp = (SequencePoint) points.elementAt(i);\r
+ sp.coord[0] -= centre[0];\r
+ sp.coord[1] -= centre[1];\r
+ sp.coord[2] -= centre[2];\r
+\r
+ //Now apply the rotation matrix\r
+ sp.coord = rotmat.vectorMultiply(sp.coord);\r
+\r
+ //Now translate back again\r
+ sp.coord[0] += centre[0];\r
+ sp.coord[1] += centre[1];\r
+ sp.coord[2] += centre[2];\r
+ }\r
\r
- rectx1 = x;\r
- recty1 = y;\r
+ for (int i = 0; i < 3; i++)\r
+ {\r
+ axes[i] = rotmat.vectorMultiply(axes[i]);\r
+ }\r
\r
- rectx2 = -1;\r
- recty2 = -1;\r
+ omx = mx;\r
+ omy = my;\r
\r
- SequenceI found = findPoint(x, y);\r
+ paint(this.getGraphics());\r
+ }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param x1 DOCUMENT ME!\r
+ * @param y1 DOCUMENT ME!\r
+ * @param x2 DOCUMENT ME!\r
+ * @param y2 DOCUMENT ME!\r
+ */\r
+ public void rectSelect(int x1, int y1, int x2, int y2)\r
+ {\r
+ for (int i = 0; i < npoint; i++)\r
+ {\r
+ SequencePoint sp = (SequencePoint) points.elementAt(i);\r
+ int tmp1 = (int) ( ( (sp.coord[0] - centre[0]) * scale) +\r
+ ( (float) getWidth() / 2.0));\r
+ int tmp2 = (int) ( ( (sp.coord[1] - centre[1]) * scale) +\r
+ ( (float) getHeight() / 2.0));\r
\r
- if (found != null)\r
+ if ( (tmp1 > x1) && (tmp1 < x2) && (tmp2 > y1) && (tmp2 < y2))\r
+ {\r
+ if (av != null)\r
{\r
- AlignmentPanel[] aps = getAssociatedPanels();\r
-\r
- for (int a = 0; a < aps.length; a++)\r
+ if (!av.getSelectionGroup().getSequences(null).contains(sp.sequence))\r
{\r
- if (aps[a].av.getSelectionGroup() != null)\r
- {\r
- aps[a].av.getSelectionGroup().addOrRemove(found, true);\r
- }\r
- else\r
- {\r
- aps[a].av.setSelectionGroup(new SequenceGroup());\r
- aps[a].av.getSelectionGroup().addOrRemove(found, true);\r
- aps[a].av.getSelectionGroup().setEndRes(\r
- aps[a].av.alignment.getWidth() - 1);\r
- }\r
+ av.getSelectionGroup().addSequence(sp.sequence, true);\r
}\r
-\r
- PaintRefresher.Refresh(this, av.getSequenceSetId());\r
}\r
-\r
- repaint();\r
+ }\r
}\r
\r
- // private void fireSequenceSelectionEvent(Selection sel) {\r
- // controller.handleSequenceSelectionEvent(new SequenceSelectionEvent(this,sel));\r
- //}\r
- public void mouseMoved(MouseEvent evt)\r
+ // if (changedSel) {\r
+ // fireSequenceSelectionEvent(av.getSelection());\r
+ // }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param x DOCUMENT ME!\r
+ * @param y DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public SequenceI findPoint(int x, int y)\r
+ {\r
+ int halfwidth = getWidth() / 2;\r
+ int halfheight = getHeight() / 2;\r
+\r
+ int found = -1;\r
+\r
+ for (int i = 0; i < npoint; i++)\r
{\r
- SequenceI found = findPoint(evt.getX(), evt.getY());\r
+ SequencePoint sp = (SequencePoint) points.elementAt(i);\r
+ int px = (int) ( (float) (sp.coord[0] - centre[0]) * scale) +\r
+ halfwidth;\r
+ int py = (int) ( (float) (sp.coord[1] - centre[1]) * scale) +\r
+ halfheight;\r
\r
- if (found != null)\r
- {\r
- this.setToolTipText(found.getName());\r
- }\r
- else\r
- {\r
- this.setToolTipText(null);\r
- }\r
+ if ( (Math.abs(px - x) < 3) && (Math.abs(py - y) < 3))\r
+ {\r
+ found = i;\r
+ }\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param evt DOCUMENT ME!\r
- */\r
- public void mouseDragged(MouseEvent evt)\r
+ if (found != -1)\r
{\r
- mx = evt.getX();\r
- my = evt.getY();\r
-\r
- //Check if this is a rectangle drawing drag\r
- if ((evt.getModifiers() & InputEvent.BUTTON2_MASK) != 0)\r
- {\r
- // rectx2 = evt.getX();\r
- // recty2 = evt.getY();\r
- }\r
- else\r
- {\r
- rotmat.setIdentity();\r
-\r
- rotmat.rotate((float) (my - omy), 'x');\r
- rotmat.rotate((float) (mx - omx), 'y');\r
-\r
- for (int i = 0; i < npoint; i++)\r
- {\r
- SequencePoint sp = (SequencePoint) points.elementAt(i);\r
- sp.coord[0] -= centre[0];\r
- sp.coord[1] -= centre[1];\r
- sp.coord[2] -= centre[2];\r
-\r
- //Now apply the rotation matrix\r
- sp.coord = rotmat.vectorMultiply(sp.coord);\r
-\r
- //Now translate back again\r
- sp.coord[0] += centre[0];\r
- sp.coord[1] += centre[1];\r
- sp.coord[2] += centre[2];\r
- }\r
-\r
- for (int i = 0; i < 3; i++)\r
- {\r
- axes[i] = rotmat.vectorMultiply(axes[i]);\r
- }\r
-\r
- omx = mx;\r
- omy = my;\r
-\r
- paint(this.getGraphics());\r
- }\r
+ return ( (SequencePoint) points.elementAt(found)).sequence;\r
}\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param x1 DOCUMENT ME!\r
- * @param y1 DOCUMENT ME!\r
- * @param x2 DOCUMENT ME!\r
- * @param y2 DOCUMENT ME!\r
- */\r
- public void rectSelect(int x1, int y1, int x2, int y2)\r
+ else\r
{\r
- for (int i = 0; i < npoint; i++)\r
- {\r
- SequencePoint sp = (SequencePoint) points.elementAt(i);\r
- int tmp1 = (int) (((sp.coord[0] - centre[0]) * scale) +\r
- ((float) getWidth() / 2.0));\r
- int tmp2 = (int) (((sp.coord[1] - centre[1]) * scale) +\r
- ((float) getHeight() / 2.0));\r
-\r
- if ((tmp1 > x1) && (tmp1 < x2) && (tmp2 > y1) && (tmp2 < y2))\r
- {\r
- if (av != null)\r
- {\r
- if (!av.getSelectionGroup().getSequences(null).contains(sp.sequence))\r
- {\r
- av.getSelectionGroup().addSequence(sp.sequence, true);\r
- }\r
- }\r
- }\r
- }\r
-\r
- // if (changedSel) {\r
- // fireSequenceSelectionEvent(av.getSelection());\r
- // }\r
+ return null;\r
}\r
+ }\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param x DOCUMENT ME!\r
- * @param y DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public SequenceI findPoint(int x, int y)\r
+ AlignmentPanel[] getAssociatedPanels()\r
+ {\r
+ if (applyToAllViews)\r
{\r
- int halfwidth = getWidth() / 2;\r
- int halfheight = getHeight() / 2;\r
-\r
- int found = -1;\r
-\r
- for (int i = 0; i < npoint; i++)\r
- {\r
- SequencePoint sp = (SequencePoint) points.elementAt(i);\r
- int px = (int) ((float) (sp.coord[0] - centre[0]) * scale) +\r
- halfwidth;\r
- int py = (int) ((float) (sp.coord[1] - centre[1]) * scale) +\r
- halfheight;\r
-\r
- if ((Math.abs(px - x) < 3) && (Math.abs(py - y) < 3))\r
- {\r
- found = i;\r
- }\r
- }\r
-\r
- if (found != -1)\r
- {\r
- return ((SequencePoint) points.elementAt(found)).sequence;\r
- }\r
- else\r
- {\r
- return null;\r
- }\r
+ return PaintRefresher.getAssociatedPanels(av.getSequenceSetId());\r
}\r
-\r
- AlignmentPanel[] getAssociatedPanels()\r
+ else\r
{\r
- if (applyToAllViews)\r
- {\r
- return PaintRefresher.getAssociatedPanels(av.getSequenceSetId());\r
- }\r
- else\r
- return new AlignmentPanel[]\r
- { ap };\r
+ return new AlignmentPanel[]\r
+ {\r
+ ap};\r
}\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff