Merge branch 'develop' into bug/JAL-2255_seq-fetcher-broken-on-linux

[jalview.git] / src / jalview / gui / ScalePanel.java

diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java
index 0aa2459..de21be6 100755 (executable)
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -101,7 +101,7 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
   @Override
   public void mousePressed(MouseEvent evt)
   {
-    int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+    int x = (evt.getX() / av.getCharWidth()) + av.getRanges().getStartRes();
     final int res;
 
     if (av.hasHiddenColumns())
@@ -282,7 +282,8 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
   {
     mouseDragging = false;
 
-    int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+    int res = (evt.getX() / av.getCharWidth())
+            + av.getRanges().getStartRes();
 
     if (av.hasHiddenColumns())
     {
@@ -326,77 +327,30 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
   }
 
   /**
-   * DOCUMENT ME!
+   * Action on dragging the mouse in the scale panel is to expand or shrink the
+   * selection group range (including any hidden columns that it spans)
    * 
    * @param evt
-   *          DOCUMENT ME!
    */
   @Override
   public void mouseDragged(MouseEvent evt)
   {
     mouseDragging = true;
+    ColumnSelection cs = av.getColumnSelection();
 
-    int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
-    if (res < 0)
-    {
-      res = 0;
-    }
-
-    if (av.hasHiddenColumns())
-    {
-      res = av.getColumnSelection().adjustForHiddenColumns(res);
-    }
-
-    if (res >= av.getAlignment().getWidth())
-    {
-      res = av.getAlignment().getWidth() - 1;
-    }
-
-    if (res < min)
-    {
-      min = res;
-    }
-
-    if (res > max)
-    {
-      max = res;
-    }
+    int res = (evt.getX() / av.getCharWidth())
+            + av.getRanges().getStartRes();
+    res = Math.max(0, res);
+    res = cs.adjustForHiddenColumns(res);
+    res = Math.min(res, av.getAlignment().getWidth() - 1);
+    min = Math.min(res, min);
+    max = Math.max(res, max);
 
     SequenceGroup sg = av.getSelectionGroup();
-
     if (sg != null)
     {
       stretchingGroup = true;
-
-      if (!av.getColumnSelection().contains(res))
-      {
-        av.getColumnSelection().addElement(res);
-      }
-
-      if (res > sg.getStartRes())
-      {
-        sg.setEndRes(res);
-      }
-      if (res < sg.getStartRes())
-      {
-        sg.setStartRes(res);
-      }
-
-      int col;
-      for (int i = min; i <= max; i++)
-      {
-        col = i; // av.getColumnSelection().adjustForHiddenColumns(i);
-
-        if ((col < sg.getStartRes()) || (col > sg.getEndRes()))
-        {
-          av.getColumnSelection().removeElement(col);
-        }
-        else
-        {
-          av.getColumnSelection().addElement(col);
-        }
-      }
-
+      cs.stretchGroup(res, sg, min, max);
       ap.paintAlignment(false);
     }
   }
@@ -424,6 +378,9 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
   {
   }
 
+  /**
+   * Creates a tooltip when the mouse is over a hidden columns marker
+   */
   @Override
   public void mouseMoved(MouseEvent evt)
   {
@@ -434,7 +391,8 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
       return;
     }
 
-    int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+    int res = (evt.getX() / av.getCharWidth())
+            + av.getRanges().getStartRes();
 
     res = av.getColumnSelection().adjustForHiddenColumns(res);
 
@@ -448,11 +406,11 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
           ToolTipManager.sharedInstance().registerComponent(this);
           this.setToolTipText(MessageManager
                   .getString("label.reveal_hidden_columns"));
-          break;
+          repaint();
+          return;
         }
       }
     }
-    repaint();
   }
 
   /**
@@ -464,7 +422,8 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
   @Override
   public void paintComponent(Graphics g)
   {
-    drawScale(g, av.getStartRes(), av.getEndRes(), getWidth(), getHeight());
+    drawScale(g, av.getRanges().getStartRes(), av.getRanges().getEndRes(),
+            getWidth(), getHeight());
   }
 
   // scalewidth will normally be screenwidth,