Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 55f06fc..ce60be6 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -137,7 +137,7 @@ public class SeqPanel extends JPanel
       MousePos o = (MousePos) obj;
       boolean b = (column == o.column && seqIndex == o.seqIndex
               && annotationIndex == o.annotationIndex);
-      // System.out.println(obj + (b ? "= " : "!= ") + this);
+      // jalview.bin.Console.outPrintln(obj + (b ? "= " : "!= ") + this);
       return b;
     }
 
@@ -881,7 +881,7 @@ public class SeqPanel extends JPanel
 
     if (lastMessage == null || !lastMessage.equals(tmp))
     {
-      // System.err.println("mouseOver Sequence: "+tmp);
+      // jalview.bin.Console.errPrintln("mouseOver Sequence: "+tmp);
       ssm.mouseOverSequence(sequence, index, pos, av);
     }
     lastMessage = tmp;
@@ -1006,7 +1006,7 @@ public class SeqPanel extends JPanel
   @Override
   public void updateColours(SequenceI seq, int index)
   {
-    System.out.println("update the seqPanel colours");
+    jalview.bin.Console.outPrintln("update the seqPanel colours");
     // repaint();
   }
 
@@ -2861,7 +2861,7 @@ public class SeqPanel extends JPanel
     if (copycolsel && av.hasHiddenColumns()
             && (av.getAlignment().getHiddenColumns() == null))
     {
-      System.err.println("Bad things");
+      jalview.bin.Console.errPrintln("Bad things");
     }
     if (repaint) // always true!
     {