JAL-244 More control of automatic idWidth adjustments. Added tests.

[jalview.git] / src / jalview / gui / StructureChooser.java

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index 1f39f3c..d63c94a 100644 (file)
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -83,6 +83,7 @@ import jalview.util.Platform;
 import jalview.util.StringUtils;
 import jalview.ws.DBRefFetcher;
 import jalview.ws.DBRefFetcher.FetchFinishedListenerI;
+import jalview.ws.datamodel.alphafold.PAEContactMatrix;
 import jalview.ws.seqfetcher.DbSourceProxy;
 import jalview.ws.sifts.SiftsSettings;
 
@@ -704,7 +705,7 @@ public class StructureChooser extends GStructureChooser
   }
 
   /**
-   * Handles action event for btn_pdbFromFile
+   * Handles action event for btn_paeMatrixFile
    */
   @Override
   protected void paeMatrixFile_actionPerformed()
@@ -733,10 +734,26 @@ public class StructureChooser extends GStructureChooser
             "label.load_pae_matrix_file_associate_with_structure",
             pdbFile.getName()));
 
+    // TODO convert to Callable/Promise
     int value = chooser.showOpenDialog(null);
     if (value == JalviewFileChooser.APPROVE_OPTION)
     {
-      localPdbPaeMatrixFileName = chooser.getSelectedFile().getPath();
+      String fileName = chooser.getSelectedFile().getPath();
+      try
+      {
+        PAEContactMatrix.validateContactMatrixFile(fileName);
+      } catch (Exception thr)
+      {
+        JvOptionPane.showInternalMessageDialog(this, MessageManager
+                .formatMessage("label.couldnt_load_file", new Object[]
+                { fileName }) + "<br>" + thr.getLocalizedMessage(),
+                MessageManager.getString("label.error_loading_file"),
+                JvOptionPane.WARNING_MESSAGE);
+        Console.error("Couldn't import " + fileName + " as a PAE matrix",
+                thr);
+        return;
+      }
+      localPdbPaeMatrixFileName = fileName;
       Cache.setProperty("LAST_DIRECTORY", localPdbPaeMatrixFileName);
     }
     validateAssociationFromFile();
@@ -1058,11 +1075,13 @@ public class StructureChooser extends GStructureChooser
       {
         pdbFileString = MessageManager.getString("label.none");
         pdbFileTooltip = MessageManager.getString("label.nothing_selected");
+        setPdbOptionsEnabled(false);
       }
     }
     else
     {
       btn_pdbFromFile.setEnabled(false);
+      setPdbOptionsEnabled(false);
       // lbl_fromFileStatus.setIcon(errorImage);
       pdbFileString = MessageManager.getString("label.none");
       pdbFileTooltip = MessageManager.getString("label.nothing_selected");
@@ -1187,7 +1206,14 @@ public class StructureChooser extends GStructureChooser
     final StructureSelectionManager ssm = ap.getStructureSelectionManager();
 
     final int preferredHeight = pnl_filter.getHeight();
+    btn_add.setEnabled(false);
+    btn_newView.setEnabled(false);
+    btn_cancel.setEnabled(false);
+    actionsPanel.setEnabled(false);
 
+    final String progress = MessageManager
+            .getString("label.working_ellipsis");
+    setProgressBar(progress, progress.hashCode());
     Runnable viewStruc = new Runnable()
     {
       @Override
@@ -1278,7 +1304,9 @@ public class StructureChooser extends GStructureChooser
                   .getCmb_assSeq().getSelectedItem();
           SequenceI userSelectedSeq = assSeqOpt.getSequence();
           if (userSelectedSeq != null)
+          {
             selectedSequence = userSelectedSeq;
+          }
           String pdbFilename = selectedPdbFileName;
 
           StructureChooser.openStructureFileForSequence(ssm, sc, ap,
@@ -1290,6 +1318,7 @@ public class StructureChooser extends GStructureChooser
           @Override
           public void run()
           {
+            setProgressBar("Complete.", progress.hashCode());
             closeAction(preferredHeight);
             mainFrame.dispose();
           }
@@ -1767,11 +1796,12 @@ public class StructureChooser extends GStructureChooser
               { seq }, viewerType);
     }
 
-    if (headless)
-      sc.mainFrame.dispose();
+    sc.mainFrame.dispose();
 
     if (showRefAnnotations)
+    {
       showReferenceAnnotationsForSequence(ap.alignFrame, seq);
+    }
 
     return sv;
   }