JAL-2738 copy to spikes/mungo

[jalview.git] / src / jalview / gui / StructureViewer.java

diff --git a/src/jalview/gui/StructureViewer.java b/src/jalview/gui/StructureViewer.java
index 189d490..e58b378 100644 (file)
--- a/src/jalview/gui/StructureViewer.java
+++ b/src/jalview/gui/StructureViewer.java
@@ -61,7 +61,8 @@ public class StructureViewer
     Cache.setProperty(Preferences.STRUCTURE_DISPLAY, type.name());
   }
 
-  public StructureViewer(StructureSelectionManager structureSelectionManager)
+  public StructureViewer(
+          StructureSelectionManager structureSelectionManager)
   {
     ssm = structureSelectionManager;
   }
@@ -123,8 +124,8 @@ public class StructureViewer
         }
       }
     }
-    return viewStructures(pdbs[0],
-            seqs.toArray(new SequenceI[seqs.size()]), ap);
+    return viewStructures(pdbs[0], seqs.toArray(new SequenceI[seqs.size()]),
+            ap);
   }
 
   public JalviewStructureDisplayI viewStructures(PDBEntry pdb,
@@ -140,7 +141,8 @@ public class StructureViewer
     JalviewStructureDisplayI sview = null;
     if (viewerType.equals(ViewerType.JMOL))
     {
-      sview = new AppJmol(ap, pdbsForFile, ap.av.collateForPDB(pdbsForFile));
+      sview = new AppJmol(ap, pdbsForFile,
+              ap.av.collateForPDB(pdbsForFile));
     }
     else if (viewerType.equals(ViewerType.CHIMERA))
     {
@@ -219,10 +221,10 @@ public class StructureViewer
    * @param vid
    * @return
    */
-  public JalviewStructureDisplayI createView(ViewerType type,
-          String[] pdbf, String[] id, SequenceI[][] sq,
-          AlignmentPanel alignPanel, StructureViewerModel viewerData,
-          String fileloc, Rectangle rect, String vid)
+  public JalviewStructureDisplayI createView(ViewerType type, String[] pdbf,
+          String[] id, SequenceI[][] sq, AlignmentPanel alignPanel,
+          StructureViewerModel viewerData, String fileloc, Rectangle rect,
+          String vid)
   {
     final boolean useinViewerSuperpos = viewerData.isAlignWithPanel();
     final boolean usetoColourbyseq = viewerData.isColourWithAlignPanel();
@@ -236,8 +238,8 @@ public class StructureViewer
               useinViewerSuperpos, viewerColouring, fileloc, rect, vid);
       break;
     case CHIMERA:
-      Cache.log.error("Unsupported structure viewer type "
-              + type.toString());
+      Cache.log.error(
+              "Unsupported structure viewer type " + type.toString());
       break;
     default:
       Cache.log.error("Unknown structure viewer type " + type.toString());