JAL-2738 update spike branch with latest

[jalview.git] / src / jalview / gui / TextColourChooser.java

diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java
index 3986561..53e2dee 100644 (file)
--- a/src/jalview/gui/TextColourChooser.java
+++ b/src/jalview/gui/TextColourChooser.java
@@ -184,9 +184,9 @@ public class TextColourChooser
    */
   protected void saveInitialSettings()
   {
-    groupColour1 = new HashMap<SequenceGroup, Color>();
-    groupColour2 = new HashMap<SequenceGroup, Color>();
-    groupThreshold = new HashMap<SequenceGroup, Integer>();
+    groupColour1 = new HashMap<>();
+    groupColour2 = new HashMap<>();
+    groupThreshold = new HashMap<>();
 
     if (sg == null)
     {
@@ -237,7 +237,7 @@ public class TextColourChooser
       sg.textColour = col;
     }
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(false, false);
   }
 
   void colour2Changed(Color col)
@@ -255,7 +255,7 @@ public class TextColourChooser
       sg.textColour2 = col;
     }
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(false, false);
   }
 
   void thresholdChanged(int value)
@@ -273,7 +273,7 @@ public class TextColourChooser
       sg.thresholdTextColour = value;
     }
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(false, false);
   }
 
   void setGroupTextColour()