Multiple Views

[jalview.git] / src / jalview / gui / TreeCanvas.java

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 70aeb60..a9c3ae0 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -49,6 +49,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
     NJTree tree;\r
     JScrollPane scrollPane;\r
     AlignViewport av;\r
+    AlignmentPanel ap;\r
     Font font;\r
     FontMetrics fm;\r
     boolean fitToWindow = true;\r
@@ -73,14 +74,15 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
      * @param scroller DOCUMENT ME!\r
      * @param label DOCUMENT ME!\r
      */\r
-    public TreeCanvas(AlignViewport av, JScrollPane scroller)\r
+    public TreeCanvas(AlignmentPanel ap, JScrollPane scroller)\r
     {\r
-        this.av = av;\r
+        this.av = ap.av;\r
+        this.ap = ap;\r
         font = av.getFont();\r
         scrollPane = scroller;\r
         addMouseListener(this);\r
         addMouseMotionListener(this);\r
-        PaintRefresher.Register(this, av.alignment);\r
+        PaintRefresher.Register(this, ap.av.getSequenceSetId());\r
     }\r
 \r
 \r
@@ -680,7 +682,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
           }\r
         }\r
 \r
-        PaintRefresher.Refresh(this, av.alignment);\r
+        PaintRefresher.Refresh(this, av.getSequenceSetId());\r
         repaint();\r
       }\r
     }\r
@@ -728,7 +730,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
         if (ob instanceof SequenceI)\r
         {\r
           treeSelectionChanged( (Sequence) ob);\r
-          PaintRefresher.Refresh(this, av.alignment);\r
+          PaintRefresher.Refresh(this, ap.av.getSequenceSetId());\r
           repaint();\r
           return;\r
         }\r
@@ -750,7 +752,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
                 colourGroups();\r
               }\r
 \r
-              PaintRefresher.Refresh(this, av.alignment);\r
+              PaintRefresher.Refresh(this, ap.av.getSequenceSetId());\r
               repaint();\r
         }\r
 \r