JAL-2401 code and help tidy for review comments

[jalview.git] / src / jalview / gui / UserDefinedColours.java

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 6e9a121..9ab4327 100755 (executable)
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -591,11 +591,6 @@ public class UserDefinedColours extends GUserDefinedColours implements
       ucs.setLowerCaseColours(newColours);
     }
 
-    // if (ap != null)
-    // {
-    // ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
-    // }
-
     return ucs;
   }