Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / gui / VamsasApplication.java

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index 8a8ba8d..28f6c59 100644 (file)
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -614,7 +614,7 @@ public class VamsasApplication implements SelectionSource, VamsasSource
       cdoc = null;
     } catch (Exception ee)
     {
-      System.err.println("Exception whilst updating :");
+      jalview.bin.Console.errPrintln("Exception whilst updating :");
       ee.printStackTrace(System.err);
       // recover object map backup, since its probably corrupted with references
       // to Vobjects that don't exist anymore.
@@ -803,7 +803,7 @@ public class VamsasApplication implements SelectionSource, VamsasSource
               // we only care about AlignmentSequence selections
               SelectionMessage sm = (SelectionMessage) message;
               sm.validate();
-              System.err.println("Received\n" + sm.getRawMessage());
+              jalview.bin.Console.errPrintln("Received\n" + sm.getRawMessage());
               Object[] jvobjs = sm.getVorbaIDs() == null ? null
                       : new Object[sm.getVorbaIDs().length];
               if (jvobjs == null)