Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_slivka-integration' into spike...

[jalview.git] / src / jalview / hmmer / Search.java

diff --git a/src/jalview/hmmer/Search.java b/src/jalview/hmmer/Search.java
index ceb79e5..6c3a71d 100644 (file)
--- a/src/jalview/hmmer/Search.java
+++ b/src/jalview/hmmer/Search.java
@@ -1,5 +1,6 @@
 package jalview.hmmer;
 
+import jalview.analysis.SeqsetUtils.SequenceInfo;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
@@ -15,6 +16,7 @@ import java.io.FileReader;
 import java.io.IOException;
 import java.util.Hashtable;
 import java.util.List;
+import java.util.Map;
 import java.util.Scanner;
 
 public abstract class Search extends HmmerCommand
@@ -34,7 +36,7 @@ public abstract class Search extends HmmerCommand
 
   boolean searchAlignment = true;
 
-  Hashtable sequencesHash;
+  Map<String, SequenceInfo> sequencesHash;
 
   public Search(AlignFrame alignFrame, List<ArgumentI> args)
   {