int index = 0;
- while (!" ------ inclusion threshold ------".equals(line)
- && !"".equals(line))
+ while (!"".equals(line) && line != null)
{
+ if (" ------ inclusion threshold ------".equals(line))
+ {
+ line = br.readLine();
+ continue;
+ }
Scanner scanner = new Scanner(line);
String evalue = scanner.next();
evalue = scanner.next();
}
+
String score = scanner.next();
checkSequenceOrder(index, scanner);
SequenceI seq = seqs[index];