fileFormat enum wip changes

[jalview.git] / src / jalview / io / AMSAFile.java

diff --git a/src/jalview/io/AMSAFile.java b/src/jalview/io/AMSAFile.java
index f82407e..798249f 100644 (file)
--- a/src/jalview/io/AMSAFile.java
+++ b/src/jalview/io/AMSAFile.java
@@ -22,6 +22,7 @@ package jalview.io;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
 
 public class AMSAFile extends jalview.io.FastaFile
 {
@@ -41,9 +42,9 @@ public class AMSAFile extends jalview.io.FastaFile
    * 
    * @return DOCUMENT ME!
    */
-  public String print()
+  public String print(SequenceI[] sqs, boolean jvsuffix)
   {
-    super.print(getSeqsAsArray());
+    super.print(sqs, jvsuffix);
 
     AlignmentAnnotation aa;
     if (al.getAlignmentAnnotation() != null)