Merge branch 'develop' into bug/JAL-2255_seq-fetcher-broken-on-linux

[jalview.git] / src / jalview / io / AlignmentFileReaderI.java

diff --git a/src/jalview/io/AlignmentFileReaderI.java b/src/jalview/io/AlignmentFileReaderI.java
new file mode 100644 (file)
index 0000000..77a7643
--- /dev/null
+++ b/src/jalview/io/AlignmentFileReaderI.java
@@ -0,0 +1,30 @@
+package jalview.io;
+
+import jalview.api.AlignExportSettingI;
+import jalview.api.AlignmentViewPanel;
+import jalview.api.FeatureSettingsModelI;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
+
+public interface AlignmentFileReaderI
+{
+
+  SequenceI[] getSeqsAsArray();
+
+  void addAnnotations(AlignmentI al);
+
+  void addGroups(AlignmentI al);
+
+  void setSeqs(SequenceI[] sequencesArray);
+
+  boolean hasWarningMessage();
+
+  String getWarningMessage();
+
+  String getInFile();
+
+  DataSourceType getDataSourceType();
+
+  FeatureSettingsModelI getFeatureColourScheme();
+
+}