JAL-3127 TODO - resolve reference to Viewport for group colour schemes instantiated...

[jalview.git] / src / jalview / io / AnnotationFile.java

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index e578a45..dd385d2 100755 (executable)
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1617,8 +1617,10 @@ public class AnnotationFile
         }
         else if (key.equalsIgnoreCase("colour"))
         {
+          // TODO need to notify colourscheme of view reference once it is
+          // available
           sg.cs.setColourScheme(
-                  ColourSchemeProperty.getColourScheme(al, value));
+                  ColourSchemeProperty.getColourScheme(null, al, value));
         }
         else if (key.equalsIgnoreCase("pidThreshold"))
         {