*/
package jalview.io;
+import java.io.File;
+import java.io.InputStream;
+import java.util.List;
+
import jalview.api.AlignViewportI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.SequenceGroup;
import jalview.util.MessageManager;
-import java.io.File;
-import java.io.InputStream;
-import java.util.List;
-
/**
* A low level class for alignment and feature IO with alignment formatting
* methods used by both applet and application for generating flat alignment
{
al.addGroup(sg);
}
+
return al;
}
else if (format.equals(HtmlFile.FILE_DESC))