import java.util.Objects;
import java.util.TreeMap;
-
public class BioJsHTMLOutput
{
private AlignmentViewPanel ap;
};
AlignmentExportData exportData = jalview.gui.AlignFrame
- .getAlignmentForExport(
-JSONFile.FILE_DESC,
+ .getAlignmentForExport(JSONFile.FILE_DESC,
ap.getAlignViewport(), exportSettings);
if (exportData.getSettings().isCancelled())
{
String bioJSTemplateString = getBioJsTemplateAsString();
String generatedBioJsWithJalviewAlignmentAsJson = bioJSTemplateString
- .replaceAll(
-"#sequenceData#", jalviewAlignmentJson)
+ .replaceAll("#sequenceData#", jalviewAlignmentJson)
.toString();
PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
{
String selectedFile = null;
JalviewFileChooser jvFileChooser = new JalviewFileChooser(
- jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]
- { "html" }, new String[]
- { "HTML files" }, "HTML files");
+ jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
+ new String[] { "html" }, new String[] { "HTML files" },
+ "HTML files");
jvFileChooser.setFileView(new JalviewFileView());
jvFileChooser.setDialogTitle(MessageManager
return selectedFile;
}
-
- public static String getBioJsTemplateAsString()
- throws IOException
+ public static String getBioJsTemplateAsString() throws IOException
{
InputStreamReader isReader = null;
BufferedReader buffReader = null;
}
-
public static void syncUpdates(String localDir, BioJSRepositoryPojo repo)
{
for (BioJSReleasePojo bjsRelease : repo.getReleases())