header updated

[jalview.git] / src / jalview / io / FastaFile.java

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 2e203af..6e3ced8 100755 (executable)
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
@@ -41,16 +41,6 @@ public class FastaFile extends AlignFile
     /**\r
      * Creates a new FastaFile object.\r
      *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public FastaFile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
-\r
-    /**\r
-     * Creates a new FastaFile object.\r
-     *\r
      * @param inFile DOCUMENT ME!\r
      * @param type DOCUMENT ME!\r
      *\r
@@ -76,6 +66,7 @@ public class FastaFile extends AlignFile
 \r
         while ((line = nextLine()) != null)\r
         {\r
+            line = line.trim();\r
             if (line.length() > 0)\r
             {\r
                 if (line.charAt(0)=='>')\r