Merge commit 'alpha/update_2_12_for_2_11_2_series_merge^2' into HEAD

[jalview.git] / src / jalview / io / FileLoader.java

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index df64702..d744fae 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -52,11 +52,9 @@ import jalview.ws.utils.UrlDownloadClient;
 
 import java.util.ArrayList;
 import java.util.List;
-
 public class FileLoader implements Runnable
 {
   private static final String TAB = "\t";
-
   String file;
 
   DataSourceType protocol;
@@ -249,7 +247,6 @@ public class FileLoader implements Runnable
     {
       return null;
     }
-
     String propertyName = sourceType == DataSourceType.FILE ? "RECENT_FILE"
             : "RECENT_URL";
     String historyItems = Cache.getProperty(propertyName);
@@ -446,6 +443,7 @@ public class FileLoader implements Runnable
                   .getFeatureColourScheme();
           if (viewport != null)
           {
+            // TODO: test if this needs to be done after addAlignment ? (like in 2.11.2)  
             if (proxyColourScheme != null)
             {
               viewport.applyFeaturesStyle(proxyColourScheme);