JAL-2418 source formatting

[jalview.git] / src / jalview / io / FileParse.java

diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java
index dc0418f..c0328d5 100755 (executable)
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -125,9 +125,8 @@ public class FileParse
   {
     if (from == null)
     {
-      throw new Error(
-              MessageManager
-                      .getString("error.implementation_error_null_fileparse"));
+      throw new Error(MessageManager
+              .getString("error.implementation_error_null_fileparse"));
     }
     if (from == this)
     {
@@ -204,16 +203,16 @@ public class FileParse
   private BufferedReader tryAsGzipSource(InputStream inputStream)
           throws Exception
   {
-    BufferedReader inData = new BufferedReader(new InputStreamReader(
-            new GZIPInputStream(inputStream)));
+    BufferedReader inData = new BufferedReader(
+            new InputStreamReader(new GZIPInputStream(inputStream)));
     inData.mark(2048);
     inData.read();
     inData.reset();
     return inData;
   }
 
-  private boolean checkURLSource(String fileStr) throws IOException,
-          MalformedURLException
+  private boolean checkURLSource(String fileStr)
+          throws IOException, MalformedURLException
   {
     errormessage = "URL NOT FOUND";
     URL url = new URL(fileStr);
@@ -242,10 +241,8 @@ public class FileParse
     {
       if (e != null)
       {
-        throw new IOException(
-                MessageManager
-                        .getString("exception.failed_to_resolve_gzip_stream"),
-                e);
+        throw new IOException(MessageManager
+                .getString("exception.failed_to_resolve_gzip_stream"), e);
       }
       throw q;
     }
@@ -326,15 +323,15 @@ public class FileParse
           {
             throw new IOException(MessageManager.formatMessage(
                     "exception.problem_opening_file_also_tried",
-                    new String[] { inFile.getName(), suffixLess,
-                        errormessage }));
+                    new String[]
+                    { inFile.getName(), suffixLess, errormessage }));
           }
         }
         else
         {
           throw new IOException(MessageManager.formatMessage(
-                  "exception.problem_opening_file",
-                  new String[] { inFile.getName(), errormessage }));
+                  "exception.problem_opening_file", new String[]
+                  { inFile.getName(), errormessage }));
         }
       }
     }
@@ -414,8 +411,8 @@ public class FileParse
     {
       // pass up the reason why we have no source to read from
       throw new IOException(MessageManager.formatMessage(
-              "exception.failed_to_read_data_from_source",
-              new String[] { errormessage }));
+              "exception.failed_to_read_data_from_source", new String[]
+              { errormessage }));
     }
     error = false;
     dataIn.mark(READAHEAD_LIMIT);
@@ -446,9 +443,9 @@ public class FileParse
     {
       return dataIn.readLine();
     }
-    throw new IOException(MessageManager.formatMessage(
-            "exception.invalid_source_stream",
-            new String[] { errormessage }));
+    throw new IOException(MessageManager
+            .formatMessage("exception.invalid_source_stream", new String[]
+            { errormessage }));
   }
 
   /**
@@ -501,9 +498,8 @@ public class FileParse
     }
     else
     {
-      throw new IOException(
-              MessageManager
-                      .getString("error.implementation_error_reset_called_for_invalid_source"));
+      throw new IOException(MessageManager.getString(
+              "error.implementation_error_reset_called_for_invalid_source"));
     }
   }