JAL_793 implemented embeding source data in exported html

[jalview.git] / src / jalview / io / FormatAdapter.java

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 74410a1..86ec140 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -258,39 +258,14 @@ public class FormatAdapter extends AppletFormatAdapter
   public Alignment readFile(String inFile, String type, String format)
           throws java.io.IOException
   {
-    Alignment al;
-    if (format.equals(JSONFile.FILE_DESC))
-    {
-      afile = new JSONFile(inFile, type);
-      al = new Alignment(afile.getSeqsAsArray());
-      afile.addAnnotations(al);
-      for (SequenceGroup sg : afile.getSeqGroups())
-      {
-        al.addGroup(sg);
-      }
-    }
-    else
-    {
-      al = super.readFile(inFile, type, format);
-    }
+    Alignment al = super.readFile(inFile, type, format);
     return al;
   }
 
   public AlignmentI readFromFile(FileParse source, String format)
           throws java.io.IOException
   {
-    Alignment al;
-    if (format.equals(JSONFile.FILE_DESC))
-    {
-      afile = new JSONFile(source);
-      al = new Alignment(afile.getSeqsAsArray());
-      afile.addAnnotations(al);
-      afile.addSeqGroups(al);
-    }
-    else
-    {
-      al = (Alignment) super.readFromFile(source, format);
-    }
+    Alignment al = (Alignment) super.readFromFile(source, format);
     return al;
   }