Merge commit 'alpha/update_2_12_for_2_11_2_series_merge^2' into HEAD

[jalview.git] / src / jalview / io / IdentifyFile.java

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 5a3d700..3024039 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -21,7 +21,6 @@
 package jalview.io;
 
 import java.util.Locale;
-
 import java.io.File;
 import java.io.IOException;
 
@@ -187,6 +186,11 @@ public class IdentifyFile
           reply = FileFormat.ScoreMatrix;
           break;
         }
+        if (data.startsWith("HMMER3"))
+        {
+          reply = FileFormat.HMMER3;
+          break;
+        }
         if (data.startsWith("LOCUS"))
         {
           reply = FileFormat.GenBank;
@@ -345,6 +349,11 @@ public class IdentifyFile
             reply = FileFormat.Rnaml;
             break;
           }
+          if (upper.substring(lessThan).startsWith("<BSML"))
+          {
+            reply = FileFormat.BSML;
+            break;
+          }
         }
 
         if ((data.length() < 1) || (data.indexOf("#") == 0))